Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq19067 107 2e-18 seq1840 102 7e-17 >seq19067 Length=13999166 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || ||||| || || || ||||| || || | || || Sbjct 10805092 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10805151 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || |||||||| || ||||| || Sbjct 10805152 AACCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCA 10805211 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 10805212 ACCACTCTCTCACC 10805225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTT--GACATAACAGACATTTT 12861 ||||||| ||| |||| || |||| || | || ||| | |||||||| | Sbjct 10800025 AAAAATCTGCATCCAGAGTGAAGACATTGTC--CATTGTTTCTGCCATAACAGCAAAACG 10800082 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| ||| | ||| ||||| || |||||||||||||| | |||||||| || Sbjct 10800083 TTGATATTCTGAAACCCGTTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTC 10800142 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||| ||||| |||||||||| Sbjct 10800143 CATGAAATCAAAAGGATTTT 10800162 >seq1840 Length=19535321 Score = 102 bits (112), Expect = 7e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || ||||| ||||| || || || ||||| | |||| ||| || Sbjct 8679194 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCTTC 8679253 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || | ||||| ||||| ||||| || |||||||| ||||||||||| ||| Sbjct 8679254 AGCCAGAAAATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 8679313 Query 13295 A 13295 | Sbjct 8679314 A 8679314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430882222450944