Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq392 172 1e-37 seq904 170 4e-37 seq19067 113 1e-19 seq1840 98.7 2e-15 >seq392 Length=2345782 Score = 172 bits (190), Expect = 1e-37 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 1981038 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTTTTCTTCATC 1981097 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||| Sbjct 1981098 CTGAGGAAGAAATTTAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 1981157 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 1981158 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 1981200 >seq904 Length=4018826 Score = 170 bits (188), Expect = 4e-37 Identities = 178/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||| ||||| || || |||||| Sbjct 3352360 ATGCCACCCCTGAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 3352419 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || ||||||||||| || |||||||| || ||||| Sbjct 3352420 GACAGCGTGCGCCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 3352479 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| ||||| || | ||| || || || || Sbjct 3352480 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCA 3352539 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || ||||| || ||||| || || || ||||| |||||||| ||| Sbjct 3352540 ACCTCGAGAGTGATAGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 3352593 >seq19067 Length=13999166 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 10805213 GTTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 10805154 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| || ||||| ||||| ||| | || || || || ||| | || ||||| || Sbjct 10805153 TTGAAGAAGAGGGGCCTGATGCCTGGACTGACCTTTTCCAATGAACTTATTAGCAGAGAT 10805094 Query 269258 GA 269259 || Sbjct 10805093 GA 10805092 >seq1840 Length=19535321 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || || ||||| Sbjct 8679327 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCCTTTGCA 8679268 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || || ||| ||||||||||||| | ||||| || | ||||| ||||||||| | Sbjct 8679267 TCAATTTTCTGGCTGAAGAAAAGAGGATTAATGCCTGGGCTCACTTTTTCTAACGAACTC 8679208 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 8679207 ATCAGTAGAGATGA 8679194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151117044286976