Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1569 154 2e-32 seq1833 107 3e-18 >seq1569 Length=1129839 Score = 154 bits (170), Expect = 2e-32 Identities = 213/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || || || ||||| |||||| | |||| || ||| | | ||| Sbjct 530838 GGAAAGCAGTGAAAGGGCAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 530779 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | | || || |||| ||||| | || || ||||||||||| |||||||| | |||| Sbjct 530778 TATGGATTATTTCAAAGCCCACTTTCCCACCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 530719 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| |||| |||| || || || ||||| || || || || | ||| | ||| Sbjct 530718 AGCAGATCGCGTTGCCCATCAGTCCCTTCAGGGAGAAAGGTGCTCCAATCTCCACCATGG 530659 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || ||||||||||| || || ||||||||||| | || || | ||||| ||||| Sbjct 530658 TTTCTCCGAAGATGGCTCCCGGCCGCGGCTTTTCCACGAGGAGGCCTGGGTACAGCTCCA 530599 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || ||||||||||| ||||| | ||||| || || ||||| || |||||||| Sbjct 530598 TGGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTCTCTCCTGT 530541 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 || |||| || || || ||||| || || ||| ||| ||||| || || ||||||| Sbjct 528854 ATAAGTCTGGTTGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 528795 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || || || | |||||||||||| |||||||| |||||||||||||| || || || Sbjct 528794 ACGTCACAGACCCGGTTGTGTTCCCTCAGCCAGATCGTAGCGTACATCATCAGGCCTGGG 528735 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | || || || | ||||| Sbjct 528734 ACCAAACCAAACACCTCCTGCCCCACAGAAAACTGCAGGTGCTCAGGAACGTGAGGAGGG 528675 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| ||| ||||||||||| || || || ||| Sbjct 528674 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTGGGTGGATACATTTCTCCATCGATCATC 528615 Query 9862 TG 9863 || Sbjct 528614 TG 528613 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| ||| | || || || || | |||| || Sbjct 526914 ACCTTTCACACCCATTGGTGTTGGACAGTCGAGTCCTACTGGTGGAAGGCTTCTTGTATA 526855 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| || ||||| |||||||||||||| ||| | || || |||||| | || Sbjct 526854 ATAGGAAAGGTTGGAATAAGCTTCCCAGCTTTTGTAATTATAATCACTGTTGTAAGTTGG 526795 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 |||||||||||||| | ||||| ||| | ||| |||| Sbjct 526794 TGGGCTGTCAATCAAGTGTGATCTGGCTGGAAAAGAAAAA 526755 >seq1833 Length=6533496 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || || || |||||||||||||| | |||| Sbjct 1920598 TCTTCACTATCTCAAATCCGGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 1920657 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| ||| || || ||||||||||| ||||| || | ||| | |||| Sbjct 1920658 AGCAGATGGGGTTTCCCAAAAGCCCCTTGAGGGAAAATGGAGCTCCAATCTCCACCATGC 1920717 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || || ||||||| Sbjct 1920718 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCACATAAAACTCCA 1920777 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 1920778 GAGCATCAATGTCTCCATACAG 1920799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708355887687680