Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2447 150 3e-32 >seq2447 Length=139237 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 38369 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 38310 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || |||||||| |||| || | |||| || |||| Sbjct 38309 CCGCCGCCTGGCTCGGCGTGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 38250 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 38249 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 38190 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||||||||| ||||||| | |||||||| |||| || || || Sbjct 38189 GCACGCCAAGAGGAAGACTGTCACGGCCATGGACGTGGTCTATGCCCTGAAGCGCCAGGG 38130 Query 16672 CCG 16674 || Sbjct 38129 ACG 38127 Score = 150 bits (166), Expect = 3e-32 Identities = 196/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 85098 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 85157 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || |||||||| |||| || | |||| || |||| Sbjct 85158 CCGCCGCCTGGCTCGGCGTGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 85217 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 85218 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 85277 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||||||||| ||||||| | |||||||| |||| || || || Sbjct 85278 GCACGCCAAGAGGAAGACTGTCACGGCCATGGACGTGGTCTATGCCCTGAAGCGCCAGGG 85337 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 85338 ACGCACCCTCTACGGCTTCGGCGGTTAAACT 85368 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 96835 CGCCAAGCGGCACCGCAAGGGGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 96776 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || |||||||| |||| || | |||| || |||| Sbjct 96775 CCGCCGCCTGGCTCGGCGTGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 96716 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 96715 GCGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 96656 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||||||||| ||||||| | |||||||| |||| || || || Sbjct 96655 GCACGCCAAGAGGAAGACTGTCACGGCCATGGACGTGGTCTATGCCCTGAAGCGCCAGGG 96596 Query 16672 CCG 16674 || Sbjct 96595 ACG 96593 Score = 149 bits (164), Expect = 1e-31 Identities = 195/270 (72%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 62533 GCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 62592 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||| || |||||||| |||| || | |||| || |||| Sbjct 62593 CGCCGCCTGGCTCGGCGTGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACG 62652 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| ||| || || ||| |||||| Sbjct 62653 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGAG 62712 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||||||||| ||||||| | |||||||| |||| || || || Sbjct 62713 CACGCCAAGAGGAAGACTGTCACGGCCATGGACGTGGTCTATGCCCTGAAGCGCCAGGGA 62772 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 62773 CGCACCCTCTACGGCTTCGGCGGTTAAACT 62802 Score = 149 bits (164), Expect = 1e-31 Identities = 195/270 (72%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 63855 GCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 63796 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||| || |||||||| |||| || | |||| || |||| Sbjct 63795 CGCCGCCTGGCTCGGCGTGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACG 63736 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| ||| || || ||| |||||| Sbjct 63735 CGCGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGAG 63676 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||||||||| ||||||| | |||||||| |||| || || || Sbjct 63675 CACGCCAAGAGGAAGACTGTCACGGCCATGGACGTGGTCTATGCCCTGAAGCGCCAGGGA 63616 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 63615 CGCACCCTCTACGGCTTCGGCGGTTAAACT 63586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79057762336896