Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq19067 98.7 1e-15 seq1840 98.7 1e-15 >seq19067 Length=13999166 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | |||||| ||||| || | || ||||| | || ||||| || Sbjct 10805092 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10805151 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 ||||||||||| | ||||| | || |||||||| ||||| ||||| |||||||| ||| Sbjct 10805152 AACCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCA 10805211 Query 21620 ACTAATCGTTCACC 21633 || | || ||||| Sbjct 10805212 ACCACTCTCTCACC 10805225 >seq1840 Length=19535321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 21490 ATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCC 21549 || || |||| |||| ||||| || | ||| |||||||| || | || ||||||||||| Sbjct 8679185 ATTCATACCT-CATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAATCC 8679243 Query 21550 TCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGC 21609 ||| || || | ||| || ||||| ||||| | || |||||||| || || || || || Sbjct 8679244 TCTTTTCTTCAGCCAGAAAATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACTGC 8679303 Query 21610 AGCAAATGCAACTAATCGTTCACC 21633 ||||| || |||| ||||| || Sbjct 8679304 TGCAAAAGCTACTACACGTTCTCC 8679327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531773994849280