Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq19067 129 7e-25 seq1840 111 2e-19 seq776 93.3 5e-14 >seq19067 Length=13999166 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| || ||||| ||||| ||||| | ||| | Sbjct 10805090 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTCAGTCCAGGCATCAGGCCCCTCTTCT 10805149 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||||||||| | ||| || || || ||||||||||| ||||| || |||||||||| Sbjct 10805150 TCAACCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACAGCAGCAAAGG 10805209 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 10805210 CAACCACTCTCTCACC 10805225 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/112 (78%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 33666 TTCTGTACAAAATCGTTC-CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 ||||||| || | ||| | ||| |||||||| ||||||||||||||||||||||||| Sbjct 10809589 TTCTGTA---AAGCTTTCTCACCAGGTTTTCATTTACTATTCCGTCACTGGCTGCAAAAA 10809645 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 | |||| ||||| | ||| |||||||| |||| | | || || ||||| Sbjct 10809646 ATGCCAGAACATGAGAGAGAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCA 10809697 >seq1840 Length=19535321 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || |||||||| ||||| ||||| || ||||||| || | || | Sbjct 8679192 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGCCCAGGCATTAATCCTCTTTTCT 8679251 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || || || || || |||||||||||||||||||| ||||| ||||| | Sbjct 8679252 TCAGCCAGAAAATTGATGCAAAGGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 8679311 Query 33446 C 33446 | Sbjct 8679312 C 8679312 Score = 82.4 bits (90), Expect = 1e-10 Identities = 79/100 (79%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 32993 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33052 |||| ||||| |||||||| | || |||||||| || || || || || ||||| || | Sbjct 8677920 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCT 8677978 Query 33053 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 | ||||||| || || ||||||||||| ||||| ||||| Sbjct 8677979 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 8678018 >seq776 Length=165087 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 45937 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 45996 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 || || || || || ||||| || | || |||||| | | || || | |||||||| Sbjct 45997 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCCAAGTGCCACGGC 46056 Query 63336 TCCAAGTATATGGCCATAACTCCAGG 63361 |||| ||| ||||| | | | ||||| Sbjct 46057 TCCAGGTAGATGGCAAAAGCCCCAGG 46082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622798689387520