Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq776 118 3e-21 seq19069 95.1 3e-14 >seq776 Length=165087 Score = 118 bits (130), Expect = 3e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || ||||||| ||||| || || ||||| ||| Sbjct 44241 GCCCAGCAGCTCTGGTACGCCATCATCGAGTCGCAGACCGAGACGGGCACCCCCTACATG 44182 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| || || |||||||||||| |||||||||| |||| || || || || Sbjct 44181 CTCTACAAGGACTCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGGACCATCAAGAGC 44122 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || ||||| || || |||||| Sbjct 44121 AGCAACCTGTGCACAGAGATCATGGAGTACACC 44089 >seq19069 Length=15583329 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || || || | || || ||| || |||||||||| ||||||||||| Sbjct 9791814 TACAAATGCCAAAGAGCTCTCTGCTAAGGGTGTGAAGATTTGGGATGCTAATGGATCACG 9791873 Query 111449 TGACTTTCTAGATT--CAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| || | || || || || || | ||||||||| Sbjct 9791874 TGAATTCCTGGATAAGCAG--GGTTTTAGCACCAGAGAGGAGGGAGACTTGGGACCAGTT 9791931 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || ||||| || ||| | |||||||| ||||| |||||| |||||| Sbjct 9791932 TATGGATTCCAGTGGAGGCACTTTGGAGCAGAATACAAAGATATGCAC 9791979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303035112514304