Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1561 98.7 8e-16 seq904 95.1 1e-14 >seq1561 Length=6025351 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| ||||| ||||| ||||| || ||||||||||| | | Sbjct 667252 CCTCCCCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 667311 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 667312 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 667371 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| | |||||| Sbjct 667372 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACATTTTCAATGGTGTCACTGGGCTCAA 667429 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| ||||||||| || || ||||| || || || || |||||||| || Sbjct 667430 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 667481 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || ||||| ||||| || ||||||||||| | | Sbjct 666568 CCACCCCGCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 666627 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 666628 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 666687 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| | ||||||| Sbjct 666688 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACATTTTCAATGGTGTCACTGGGCTCCA 666745 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || |||| || || || || |||||||| Sbjct 666746 CCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 666794 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||| || |||||||| || ||||||||||| | || ||| |||| Sbjct 666811 AGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 666870 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 666871 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCT 666930 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | ||||||| |||| |||||||| Sbjct 666931 TGGATCTTGGC--CTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 666988 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||| || || || || |||||||| Sbjct 666989 TCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 667022 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||| || |||||||| || ||||||||||| | || ||| | || Sbjct 667039 AGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 667098 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || |||| ||| ||||| || | ||| || ||||| Sbjct 667099 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 667158 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| | |||||| ||||| |||||||| Sbjct 667159 TGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGG 667216 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| ||||| || || |||||||| Sbjct 667217 TCTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 667250 >seq904 Length=4018826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||| ||||| || ||||||||||||| || ||| |||| Sbjct 3351921 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTC 3351980 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| || | || |||| ||| ||||| || | ||| || ||||| Sbjct 3351981 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTC 3352040 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| ||| | |||||| Sbjct 3352041 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATA 3352098 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || ||||| |||||||| Sbjct 3352099 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352133 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || ||||||||||| | || || |||| Sbjct 3352378 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCGTCT 3352437 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || ||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 3352438 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 3352497 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | ||||| | |||||| || | ||||| | Sbjct 3352498 TGGATCTTGGCT--TTCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATAG 3352555 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || ||||| || || ||||| |||||||| ||| Sbjct 3352556 TTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 3352593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404993841345280