Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1645 95.1 2e-14 seq1542 95.1 2e-14 seq2781 89.7 1e-12 seq2786 86.0 1e-11 >seq1645 Length=24916 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 22351 AGAGAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 22292 Query 142559 CGAGCCCCACATCGGGC 142575 |||||||||| | |||| Sbjct 22291 CGAGCCCCACGTTGGGC 22275 >seq1542 Length=194991 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 12518 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 12459 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 12458 TCCCGGCAGAGA 12447 >seq2781 Length=2107 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 148 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 207 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 208 CCCACGTTGGGC 219 >seq2786 Length=3874845 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| |||||||||||||||||||| | ||||||||||| |||||||||||||||| Sbjct 1953821 GCCCAGTTAGCTCAGTCGGTAGAGCATGAAACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1953762 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1953761 CCCACGTTGGGC 1953750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027585637799552