Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1561 111 1e-19 seq904 100 2e-16 >seq1561 Length=6025351 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || || || || |||||| || || || ||| Sbjct 667054 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 667113 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 667114 GCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 667173 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| ||||||||| Sbjct 667174 ACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGAGTT 667233 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 667234 TTCACGAAGATCTGCATGCCT 667254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || ||||| || || || ||| Sbjct 667282 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 667341 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 667342 GCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 667401 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 667402 ACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 667461 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 667462 TTCACGAAGATCTGCATG 667479 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || || || | || || | ||| | || ||||| || || |||||||| || Sbjct 666566 TACCACCCCGCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 666625 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || || || ||||| || || || ||||| |||| || | ||| ||||| || | Sbjct 666626 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 666685 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||||||||| ||||| ||||| || | | ||||| |||||| ||| || | Sbjct 666686 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCA 666745 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | |||| ||| | || ||||| |||| || || || || ||||||||| Sbjct 666746 CCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCATG 666795 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || || || || ||||| || || || ||| Sbjct 666826 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 666885 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 666886 GCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 666945 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 666946 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 667005 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 667006 TTCACGAAGATCTGCATG 667023 >seq904 Length=4018826 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| || || || ||||| || || || ||| Sbjct 3351937 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCA 3351996 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 3351997 GCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 3352056 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 3352057 ACATTCTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATAGTCTTGCCAGTCAGGGTC 3352116 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 3352117 TTCACAAAGATCTGCATG 3352134 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || ||| || ||||| || || || ||| Sbjct 3352165 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCA 3352224 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| || ||||||||||| ||||| ||||| || Sbjct 3352225 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTC 3352284 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| || ||| ||| || || | ||| | || ||||| ||||| || Sbjct 3352285 ACGTTCTCGATGGTATCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3352344 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 3352345 TTCACAAAGATCTGCATG 3352362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || ||||| || || || ||| Sbjct 3352393 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCGTCTTCCAGCTGCTTTCCA 3352452 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| ||||| ||| Sbjct 3352453 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 3352512 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | || | |||||||| ||||| || Sbjct 3352513 ACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATAGTTTTGCCAGTCAGGGTC 3352572 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 3352573 TTCACAAAGATCTGCATG 3352590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420036743960064