Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq776 122 2e-22 seq19067 87.8 3e-12 >seq776 Length=165087 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||||||||| | ||||| ||||| ||||| |||| |||||||| Sbjct 44073 CCACCTCATCCTTGCTGGTGTACTCCATGATCTCTGTGCACAGGTTGCTGCTCTTGATGG 44132 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 | ||||||| ||| || ||| |||| |||||||| |||||||||||||||| |||| Sbjct 44133 TCCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 44192 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||| | ||| || | || |||||| | | ||||| ||| || Sbjct 44193 TGCCCGTCTCGGTCTGCGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 44252 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 || || ||||| |||||||| Sbjct 44253 GCCGGGCACGGCCCTGCCGCTCGTAGC 44279 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| ||| ||||| |||| | |||||| || Sbjct 45942 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTC 46001 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| ||| || | || ||||||| ||| | |||||| ||||||| Sbjct 46002 TTTCCCAGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAG 46061 Query 245128 GTAGA 245132 ||||| Sbjct 46062 GTAGA 46066 >seq19067 Length=13999166 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 10805225 GGTGAGAGAGTGGTTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 10805166 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||| | ||| ||| || |||||| ||||| ||||| || || ||||| Sbjct 10805165 GCTATATTTTGGTTGAAGAAGAGGGGCCTGATGCCTGGACTGACCTTTTCCAATGAACTT 10805106 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 10805105 ATTAGCAGAGATGAGG 10805090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944114069534720