Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1561 150 2e-31 seq904 131 2e-25 >seq1561 Length=6025351 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| ||||| | || ||||| || || |||||||| || | Sbjct 666567 ACCACCCCGCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 666626 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||||| ||||||| ||||||||||| ||| | || |||| |||||||||||| || Sbjct 666627 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGG 666686 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||| ||| || | || |||| || ||||| Sbjct 666687 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCAC 666746 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| ||||| || || ||||| || ||||| Sbjct 666747 CTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 666794 Score = 145 bits (160), Expect = 8e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || || || || || |||||||| || | | ||||||| |||| Sbjct 666810 AAGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 666869 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | || |||| |||||||||||| ||||| ||||| || || Sbjct 666870 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTC 666929 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| || | || |||| || ||||| || | || | ||| Sbjct 666930 TTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 666989 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| ||||| || || ||||| || ||||| Sbjct 666990 CTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 667022 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || || || || || |||||||| || | | ||||||| | || Sbjct 667038 AAGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 667097 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| || | || |||| |||||||||||| ||||| ||||| || || Sbjct 667098 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTC 667157 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || |||| || || ||||| | || | ||| Sbjct 667158 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGT 667217 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| |||||| ||||| || ||||| Sbjct 667218 CTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 667250 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| ||||||| ||||||||||| Sbjct 667282 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 667341 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||| ||||| ||||| || || || || || ||| Sbjct 667342 GCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 667401 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || || || || | || | ||||||||| |||| || Sbjct 667402 ACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 667461 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || ||||| || Sbjct 667462 TTCACGAAGATCTGCATGTT 667481 >seq904 Length=4018826 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | ||||||| ||||| Sbjct 3351922 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCT 3351981 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| |||||||||||| ||||| ||||| || || Sbjct 3351982 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 3352041 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || ||||| | || | ||| Sbjct 3352042 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATAGTC 3352101 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 3352102 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352133 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | |||||| ||||| Sbjct 3352150 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 3352209 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| ||||||||| || ||||| ||||| || ||| Sbjct 3352210 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 3352269 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||||| || || || || | || | |||| Sbjct 3352270 TGGATCTTGGCCTTCACGTTCTCGATGGTATCACTGGGTTCAACCTCGAGGGTGATGGTC 3352329 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 3352330 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499525684679680