Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq904 95.1 1e-14 seq1561 89.7 5e-13 >seq904 Length=4018826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| || || ||| ||| || || || || || | | Sbjct 3352396 GATTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCGTCTTCCAGCTGCTTTCCAGCA 3352455 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || ||| | Sbjct 3352456 AAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACA 3352515 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||||| || | ||||| |||||||| || || Sbjct 3352516 TTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATAGTTTTGCCAGTCAGGGTCTTC 3352575 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 3352576 ACAAAGATCTGCATG 3352590 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 ||||| || | || |||| || | ||| | | | || ||||| || |||||||||||| Sbjct 3351904 CAGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 3351963 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 || || ||| ||| || || || || || | |||| || | ||| ||||| || Sbjct 3351964 GACAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGG 3352023 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || ||||| ||||| ||| || || | | || | |||||| | | ||| Sbjct 3352024 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCA 3352083 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || | || | || || |||||||| || || ||||| ||||||||| Sbjct 3352084 ACTTCAAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3352134 >seq1561 Length=6025351 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || || || | | | || ||||| || ||||||||||| Sbjct 667251 GCCTCCCCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 667310 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || || || || || | | |||| || | ||| ||||| || || Sbjct 667311 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGG 667370 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | ||| | |||||| | | ||| || Sbjct 667371 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAAC 667430 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || |||||||| || || || || ||||||||| Sbjct 667431 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 667479 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | ||| | | | || ||||| || ||||||||||| | Sbjct 666568 CCACCCCGCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 666627 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| || || || || || | | |||| || | ||| ||||| || || Sbjct 666628 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 666687 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | ||| | |||||| | | ||||||| Sbjct 666688 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 666747 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || |||| || || || || ||||||||| Sbjct 666748 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCATG 666795 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || ||| ||| || || || || || | | Sbjct 666829 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCA 666888 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || ||||| ||||| ||| || || | Sbjct 666889 AAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACA 666948 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||||||||| | || | || || || |||| || || Sbjct 666949 TTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTC 667008 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 667009 ACGAAGATCTGCATG 667023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496144091043840