Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq904 93.3 3e-14 seq1561 91.5 1e-13 >seq904 Length=4018826 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| || ||| | | | ||||||| | || Sbjct 3352158 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCCAGCTG 3352217 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | |||| | ||| ||||| ||||| ||||||||||| || || Sbjct 3352218 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATCTT 3352277 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || ||||| || ||| || || | ||| ||||| || || || Sbjct 3352278 GGCCTTCACGTTCTCGATGGTATCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCAGT 3352337 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || ||||| Sbjct 3352338 CAGGGTCTTCACAAAGATCTGCAT 3352361 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAAT 15030 ||| ||||| || || || || |||||||| ||| || || | | | ||||||| | Sbjct 3351930 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG--GACAAGGTGCGCCCGTCTTCCAGC 3351987 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || ||||||||| | |||| | ||| |||||| ||||| ||||||||||| || Sbjct 3351988 TGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATC 3352047 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| || ||| | || || || || || || || || | ||| || || || || Sbjct 3352048 TTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATAGTCTTGCCA 3352107 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||| || ||||| Sbjct 3352108 GTCAGGGTCTTCACAAAGATCTGCAT 3352133 >seq1561 Length=6025351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || || |||||||| || || | | | ||||||| Sbjct 667270 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 667329 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | |||| | ||| |||||| ||||| ||||||||||| Sbjct 667330 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 667389 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| |||| || || || || || || || ||||| ||||| || Sbjct 667390 ATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTG 667449 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || || || ||||| ||| Sbjct 667450 CCAGTCAGGGTCTTCACGAAGATCTGCATGTTT 667482 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || | ||| ||||| || || || || |||||||| || Sbjct 666568 CCACCCCGCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 666627 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||||| | || |||||||| | |||| | ||| |||||| ||| Sbjct 666628 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 666687 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| |||| || || || || || || Sbjct 666688 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 666747 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||||| || || || || || ||||| Sbjct 666748 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 666794 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || || || |||||||| || || | | | ||||||| | || Sbjct 666819 ATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 666878 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||| | |||| | ||| |||||| ||||| ||||||||||| || || Sbjct 666879 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTT 666938 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| |||| || || || || || || || | ||| ||||| || ||||| Sbjct 666939 GGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGT 666998 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 666999 CAAGGTCTTCACGAAGATCTGCAT 667022 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || || || |||||||| || || | | | | ||||| | || Sbjct 667047 ATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 667106 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | |||| | ||| |||||| ||||| ||||||||||| || || Sbjct 667107 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 667166 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || || || || || || | ||| ||||| || || || Sbjct 667167 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGT 667226 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||| || || || ||||| Sbjct 667227 CAGAGTTTTCACGAAGATCTGCAT 667250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357308927803520