Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1569 154 2e-32 seq1833 98.7 1e-15 >seq1569 Length=1129839 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| |||| |||||| ||| |||| || ||||| || ||||| || || || ||| Sbjct 528845 GTTGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGGACGTCACAG 528786 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| ||||||||| |||||||| || || ||||||||||| | || || || |||||| Sbjct 528785 ACCCGGTTGTGTTCCCTCAGCCAGATCGTAGCGTACATCATCAGGCCTGGGACCAAACCA 528726 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | |||||| | ||| |||| | || || || | || | || | ||| Sbjct 528725 AACACCTCCTGCCCCACAGAAAACTGCAGGTGCTCAGGAACGTGAGGAGGGTAGATCATC 528666 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || || || || ||||| ||||||||||| || || || | ||| Sbjct 528665 TCTGCCTGAGTGTCCTTCACCGTGGGTGGATACATTTCTCCATCGATCATCTG 528613 Score = 150 bits (166), Expect = 3e-31 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || || || || ||||| ||| || ||||| ||| | || || | Sbjct 530838 GGAAAGCAGTGAAAGGGCAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 530779 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | | | || || || || || | ||| || ||||||||||| ||||||||| | |||| Sbjct 530778 TATGGATTATTTCAAAGCCCACTTTCCCACCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 530719 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| |||| |||| || || |||| ||| || || || || | ||| | ||| Sbjct 530718 AGCAGATCGCGTTGCCCATCAGTCCCTTCAGGGAGAAAGGTGCTCCAATCTCCACCATGG 530659 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || ||||||||||| || || ||||| ||||| |||| || ||| | ||| || || | Sbjct 530658 TTTCTCCGAAGATGGCTCCCGGCCGCGGCTTTTCCACGAGGAGGCCTGGGTACAGCTCCA 530599 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||| ||| ||||| || |||||| || || || || || ||||| ||| Sbjct 530598 TGGCATCGATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTCTCTCCT 530543 Score = 100 bits (110), Expect = 4e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| || | | || |||| | |||| ||| | ||| Sbjct 530034 GATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAAAGT 529975 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| || | |||||| ||||||| || ||||| ||||| || ||||||||||| Sbjct 529974 GTCAGGCAGAAGGGGGTGCCAGTGGTAGAGAGTGTTGAATTCGGCTGCAATTCGGTTCTG 529915 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||| ||||| ||| ||| || | ||| |||||||| | || | ||||||||| Sbjct 529914 GTATTGAAACCTCTGGT--TGAAGAGCAGCTCAGGGTCAAACTTGAGTTTGAAGTGGTAG 529857 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || | || || ||||| | ||| | || || || ||||| || || Sbjct 529856 CCACTCAAGTGTTGCACATAGTCCTCGATAACGATCTTGATTGTTTCTCCTGT 529804 >seq1833 Length=6533496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 188/277 (68%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||| ||| || | ||| || || | ||| || ||||| || || || || Sbjct 1920560 CTTCACGTTGAGGCACACGAGCTTCTCAAGTGATGCTGTCTTCACTATCTCAAATCCGGT 1920619 Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021 | || || || || ||||||||||||||| | |||||||||||| ||| ||| || Sbjct 1920620 TGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCCAAAAG 1920679 Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081 ||| || | |||||| ||||| || | ||| | ||||| || || || || || ||| Sbjct 1920680 CCCCTTGAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCTCCAAAAATACCATTGGG 1920739 Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | ||||| || | | ||||| || | || | ||| || | ||| ||||| || Sbjct 1920740 TTGGGGTTTCTCAAGCAGCAAGCCCACATAAAACTCCAGAGCATCAATGTCTCCATACAG 1920799 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||||| ||| || || |||| | ||| ||| || Sbjct 1920800 CTCTTCCAGCTCTGCTGCCTTCTCTTCCTCCCCTGCA 1920836 Score = 96.9 bits (106), Expect = 5e-15 Identities = 173/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9715 TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || ||| | | ||| ||||||| || || || | ||||||||| | ||| || ||| Sbjct 1923567 TCACCGATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGT 1923626 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 || |||| || | |||||||| | |||||| || | |||||| | ||||||||||| Sbjct 1923627 TCCCGTTTCAGGATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 1923686 Query 9835 ATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGC 9894 | ||||||| | || ||||| || | ||||||||| | || || | ||| Sbjct 1923687 CAGAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCCACTGCCAGCTGCTTCTCCTTGGGT 1923746 Query 9895 ACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCA 9954 || | |||| || | ||| || ||| | | || |||| ||||||| |||| ||| Sbjct 1923747 ACAGCAGGCGGGTAGACCATGTGAACCGGAGCATCAGTGACCATGGGGGGGTACACTTCT 1923806 Query 9955 CCGTCAATAACCT 9967 || || | |||| Sbjct 1923807 CCATCCACCACCT 1923819 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTA 9627 |||||| | ||||| |||||||| | || || || ||| |||||| || || Sbjct 1922857 TGCCAGTGATAGAGCTGGTTGAACTCCACTGCGATGCGATTCCTGTACTGGAACTGTGTC 1922916 Query 9628 CCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACA 9687 || ||||| | ||| |||||||| | || |||| |||||||||||| ||||||||| Sbjct 1922917 CCAAACAGCAGCTCAGGGTCAAACTTCAGGCTGAAGAAGTACCCGCTGAGATGCTGGACA 1922976 Query 9688 TACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || | | || | ||| |||||||| ||||| Sbjct 1922977 TAGTCTTCAATGACAATCTTAATGGTCTCCCC 1923008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723555463244800