Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1561 156 5e-33 seq904 134 2e-26 >seq1561 Length=6025351 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | ||| ||||||| ||| |||||| ||||| |||||||| | Sbjct 667022 TGCCACCCCTCAGACGAAGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAG 667081 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| ||||| |||| | ||||||||||| | Sbjct 667082 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGG 667141 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | ||||| || | || | Sbjct 667142 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 667201 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 667202 CTTCCAGGGTGATGGTCTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 667250 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | ||| ||||||| ||| |||||| ||||| |||||||| | Sbjct 666794 TGCCACCCCTCAGACGAAGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAG 666853 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| |||| || ||||||||||| || || |||| | ||||||||||| | Sbjct 666854 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 666913 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| ||||| | | | ||||| || | |||| Sbjct 666914 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCA 666973 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| |||| || || || ||||| ||||| Sbjct 666974 CCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 667022 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | ||||| ||||| |||| || ||||| ||||| |||||||| | Sbjct 667250 TGCCTCCCCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 667309 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| |||| || ||||||||||| || || |||| | ||||||||||| | Sbjct 667310 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 667369 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| | | | ||||| || | || | Sbjct 667370 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAA 667429 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | |||| |||||||| ||||| ||||| || || || ||||| ||||| || Sbjct 667430 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 667481 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||| | || ||||| ||||| |||||||| || || |||||| || Sbjct 666580 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 666639 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||||| || | || |||||| Sbjct 666640 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTG 666699 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||||| | | | ||||| || | ||||| |||| |||||| Sbjct 666700 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 666759 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||| || || || ||||| ||||| Sbjct 666760 GTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 666794 >seq904 Length=4018826 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| ||| ||||| | || ||||| ||||| |||||||| | Sbjct 3352133 TGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 3352192 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||||||| |||| || ||||||||||| ||||| |||| | ||||||||| | | Sbjct 3352193 ACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGG 3352252 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| |||||| ||| | || | | || || || | ||| | Sbjct 3352253 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCACTGGGTTCAA 3352312 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 3352313 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352361 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||| ||||| | || ||||| ||||| ||||||||||| Sbjct 3351906 GCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 3351965 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 | |||||| |||| || ||||||||||| ||||| |||| | ||||||||||| || Sbjct 3351966 CAAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGG 3352025 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| ||| | || | | ||||| || | || || Sbjct 3352026 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 3352085 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 3352086 TTCAAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565103647165440