Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2070 116 3e-20 >seq2070 Length=3411099 Score = 116 bits (128), Expect = 3e-20 Identities = 279/416 (67%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | ||||| || |||||||||||||| | ||||| || || || || || ||||| Sbjct 1202822 GCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTTACCTCGATCTGGGGGACT 1202881 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || ||||| || | | ||| | ||||| || || || || Sbjct 1202882 CCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGTAAGTTGTTGTCCTTT 1202941 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436 || | || ||||| ||| | | |||| || | ||| | | || || ||||| | Sbjct 1202942 GTCATAGCTCTCTCACCTTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGAGT 1202999 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || ||||| ||| ||| ||||| || ||||| | | || | | Sbjct 1203000 AGGTGGTGAAGG-TCTGGGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCA 1203058 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| |||||||| | || || || ||||| |||||||| | || | Sbjct 1203059 GTCATCACTCCACCAGCTGTTTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAGCAAC 1203118 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || ||| | | || | || ||||||||||| | |||||||||| Sbjct 1203119 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCA 1203178 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 || |||||||||||||| || || | ||| || || | |||||||||||| || Sbjct 1203179 TAAGCAACAGCTTCATCGGGGTTGATGCTTTTGTTGAGCTCTTTACCATTGAAGAA 1203234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779875984536832