Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2070 311 1e-79 seq1150 167 3e-36 >seq2070 Length=3411099 Score = 311 bits (344), Expect = 1e-79 Identities = 1032/1594 (65%), Gaps = 26/1594 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| |||||||| || || | Sbjct 1202701 TTCATCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATGCGGTCAATGTCATCCTT-GC 1202759 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | ||||||| | ||| || Sbjct 1202760 TAAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 1202819 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 ||||||| ||||||| |||||||| ||||| | || || |||| | || || || Sbjct 1202820 CAGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTTACCTCGATCTGGGGGA 1202879 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| ||||| | || ||||| |||| ||| Sbjct 1202880 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGTAAGTTGTTGTCCT 1202939 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTG 6864 | | | | | |||||||| || || | | | ||| || || || ||| Sbjct 1202940 TTGTCATAGCTCTCTCACCTTCGTACACCTGGACCAGGACACTGCTC--TGGTTGTCTGA 1202997 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | |||| | || || || | ||||| || || || | | || | | Sbjct 1202998 GTAGGTGGTGAAGGTCTGGGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGC 1203057 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 ||||| | ||||| ||||||| || || |||||||| || || |||| || || Sbjct 1203058 AGTCATCACTCCACCAGCTGTTTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAGCAA 1203117 Query 6985 CAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 ||| || || ||| || | || ||| | | ||| || ||||| || | || || Sbjct 1203118 CAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACC 1203177 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 || || || || ||||||||||| || |||| || || |||||||| || || | || Sbjct 1203178 ATAAGCAACAGCTTCATCGGGGTTGATGCTTTTGTTGAGCTCTTTACCATTGAAGAAGTC 1203237 Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | || || | ||| || || ||||| || || || || || |||| || || || | Sbjct 1203238 CTGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCCCCCACCAGCACAATCTCCTG 1203297 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224 | | ||||| | ||| | || || || | || || || || |||| | Sbjct 1203298 GATCTGGCCCTTATCTAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGAGTGCC 1203357 Query 7225 ACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 |||||| | || | || |||||||| || ||||| |||||||| || ||||| || Sbjct 1203358 ACGGAAGAGATCGGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAGGTGTAGAAGTC 1203417 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGT 7341 || ||| ||||| | || || || |||||| | | || ||| || || | || Sbjct 1203418 AATGCCCTCGTAGAGGGAGTCGATCTCAATGCTCGCCTG---CGTGGAGGAGCTGAGGGT 1203474 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || | ||| || ||||| |||| || || | || ||| ||| || | || Sbjct 1203475 GCGCTTGGCCCTCTCGCAAGCCGTGCGTAGGCGCCGCACCGCCCGCTTGTTGCCCGCGAT 1203534 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAA 7461 || ||| || || || || |||||||| ||||| | | | || || Sbjct 1203535 GTCGCGCTTGTGCTTGCGCTTGAACTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAA 1203594 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 || || ||||||| || || ||||| || || | || || |||||||| || | || Sbjct 1203595 GTCCTCCCCACCCAGATGGGTGTCCCCAGCTGTGGACTTCACCTCAAAGATGCCGTCCTC 1203654 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 ||| | | | || ||||| || || || || |||| |||||| ||||| |||||| | Sbjct 1203655 GATGGTAAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACGTTCTT 1203714 Query 7582 ATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | | | ||||| || | || || ||||| || || ||||| || || Sbjct 1203715 CTCTCCAGCCCGGGTGCCTTTCTTGTCCAAGCCATAGGCGATGGCAGCTGCCGTGGGCTC 1203774 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||||| || || | ||||||||| | || || | |||||||| || || || || Sbjct 1203775 GTTAATGATGCGCATCACGTTCAGGCCGGTGATGGTGCCAGCATCTTTGGTGGCCTGGCG 1203834 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||||||||| || || ||||| | ||| |||| | || || || || Sbjct 1203835 CTGGGAGTCGTTAAAGTAAGCAGGCACCGTGATGACAGCGTTCTGCACCTTGCGCCCCAG 1203894 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||| | || || || || ||||| ||||| || ||||| || ||||| || | | Sbjct 1203895 ATAGGCCTCAGCAATCTCCTTCATCTTGGTCAGCACCATGGAGCTGATCTCCTCCG-GGA 1203953 Query 7816 AAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 | | || ||| | || || || | || || | | | |||| || |||| | || Sbjct 1203954 AGAAGGTCTTCATCTCGCCCTTGTACTCCACCTGCACCTTGGGCTT-GCCGC--CCTCGT 1204010 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 | || | | ||| | ||||| ||| || ||| |||| |||||| | Sbjct 1204011 TCACCACGCGGAAGGGCCAGTGCTTCATGTCGGACTGCACCGTGGGGTCGTCAAACTTGC 1204070 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| || ||||| || || || | ||||| | |||||||| || ||||||| Sbjct 1204071 GGCCGATGAGGCGCTTGGCGTCGAAGATGGTGTTGGTCGGGTTCATAGCCACCTGGTTCT 1204130 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 | || || |||||||| || || || | || || || || ||||| || || | Sbjct 1204131 TGGCAGCATCCCCGATCAGGCGCTC---CGTGTCGGTGAAGGCCACGTAGCTCGGTGTGG 1204187 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 | || || || |||||||| || || || || || | | | || |||| || |||| Sbjct 1204188 TGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACCTTGCCATGCTGGAAGACACCCACGC 1204247 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | || ||||| || || || || || ||||| || Sbjct 1204248 AGGAGTACGTGGTGCCCAAGTCGATGCCGATCGC 1204281 >seq1150 Length=121153 Score = 167 bits (184), Expect = 3e-36 Identities = 367/546 (67%), Gaps = 12/546 (2%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| ||||| || | || ||||| ||||| || || ||| Sbjct 1956 GCACCGTAAGCCACAGCTTCATCAGGGTTGATGCTCTTGTTCAGCTCTTTGCCATTGAAA 1897 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || | ||||| || ||||| || || || ||||| ||||| || || Sbjct 1896 AAATCCTGCAGCAACTTCTGAATCTTGGGGATCCGAGTAGACCCACCAACCAACACAATA 1837 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 |||| | | ||| || || | ||| | || | || | || || ||||| |||| Sbjct 1836 TCATGGATCTGCGACTTGTCCAGCTTGGCATCCCTCAGAGCCTTCTCCACAGGATCCAGG 1777 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 ||| ||||||| ||| ||| |||||||| || || | ||| ||||| || Sbjct 1776 GTACCC---CGGAACAGGTCGGCGTTCAGCTCCTCAAAGCGAGCTCTGGTGATGGAGGTG 1720 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||| |||| || || || | |||||||| || ||| | | || | | || || Sbjct 1719 TAGAAGTCAATCCCCTCATAGAGAGAATCAATCTCGATGCTGGCCTGGGTGGAGGAGGAC 1660 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || | ||| || ||||| || ||||| || | || || | || | | ||| | Sbjct 1659 AGGGTCCTCTTGGCACGCTCGCAGGCCGTGCGCAGGCGCCGCACCGCCCTCTTGTTCTCA 1600 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTC 7453 || || ||||| || || || || ||||| | |||||| | || | | | | Sbjct 1599 CTGATGTCCTTCTTGTGCTTGCGCTTGAACTCCGCGATGAAGTGGTTGACCATGCGGTTG 1540 Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 || || ||||| ||||||||||| || || ||||| || | ||| || ||||| || Sbjct 1539 ---TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCCGCAGTGGATTTCACCTCAAAAATG 1483 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || ||||||| | | | || |||||||| || ||||| |||||||| || || || Sbjct 1482 CCATCTTCAATCGTCAGAATGGACACATCAAAGGTGCCACCTCCCAGGTCGAAGATCAGA 1423 Query 7574 ACGTTC 7579 |||||| Sbjct 1422 ACGTTC 1417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634981384340480