Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1561 154 3e-32 seq904 131 4e-25 >seq1561 Length=6025351 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| ||||| || || || ||||| || | || || | ||||||||| Sbjct 667042 ACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 667101 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || ||||| || ||||||||||| ||||| || Sbjct 667102 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 667161 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| || ||||| ||||| | ||| Sbjct 667162 ATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATGGTC 667218 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| |||||| ||||| | ||||| Sbjct 667219 TTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 667250 Score = 140 bits (154), Expect = 7e-28 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| ||||| || || || ||||| || | || || | ||| ||||| Sbjct 666814 ACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 666873 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| |||||||| Sbjct 666874 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGG 666933 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || ||||||||||| ||| ||||| || ||||| | ||| Sbjct 666934 ATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 666990 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || ||||| | ||||| Sbjct 666991 TTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 667022 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || || | ||| ||||| Sbjct 666586 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 666645 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| |||||||| Sbjct 666646 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGG 666705 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || ||||||||||| ||| ||||| || ||||| | ||| Sbjct 666706 ATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 666762 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || ||||| | ||||| Sbjct 666763 TTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 666794 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||| || | || || | ||| ||||| ||||| Sbjct 667275 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 667334 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || | || ||||| || ||||||||||| ||||| || || || Sbjct 667335 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 667394 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| || ||||||||||| ||| || || || | ||| | ||||| || Sbjct 667395 GGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCAACCTCCAAGGTGATGGTCTTGCC 667451 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| | ||||| Sbjct 667452 AGTCAGGGTCTTCACGAAGATCTGCAT 667478 >seq904 Length=4018826 Score = 131 bits (144), Expect = 4e-25 Identities = 159/213 (75%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| || || ||||| || || || || ||||| |||| |||| || | ||| ||||| Sbjct 3351925 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGCCCGTCTTC 3351983 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || | || ||||| || ||||||||||| ||||| || Sbjct 3351984 CAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTG 3352043 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||| || |||||||||||||| ||| || ||||||||||| | || Sbjct 3352044 GATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACTTCAAGGGTGATAGT 3352100 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| || || || || | ||||| Sbjct 3352101 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352133 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | ||||| | ||| ||||| Sbjct 3352153 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCC 3352212 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || ||||| || ||||||||||| |||||||| Sbjct 3352213 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGG 3352272 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| ||||| || ||| ||| || || ||||| | ||| Sbjct 3352273 ATCTTGGCCTTCACGTTCTCGATGGTATC---ACTGGGTTCAACCTCGAGGGTGATGGTC 3352329 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 3352330 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352361 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || || | ||| ||||| Sbjct 3352381 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCGTCTTCC 3352440 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 3352441 AGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 3352500 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || || || ||||| |||||||| Sbjct 3352501 ATCTTGGCTTTCACATTCTCGATGGTGTC 3352529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109210487076224