Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1150 109 4e-18 seq904 107 2e-17 >seq1150 Length=121153 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || ||||| ||||| |||||||| || ||||| ||||| ||||||| Sbjct 1171 ATGCTGTGGTGACCGTGCCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATG 1230 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || || || || | ||||||||||| || || ||||||||| Sbjct 1231 CTGGAACCATTGCAGGGCTCAACGTGCTGAGAATTATCAATGAGCCAACAGCTGCTGCAA 1290 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 1291 TAGCTTATGGGCTGGACAAA 1310 >seq904 Length=4018826 Score = 107 bits (118), Expect = 2e-17 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| |||||||| ||||| ||| || || ||||| |||| || || Sbjct 3352368 CCTGAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGT 3352427 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||||| || || ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 3352428 GCGCCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 3352487 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || || || ||| || ||| || || ||| || | | ||||| Sbjct 3352488 TTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAG 3352547 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | |||||| ||||| || || || || || || ||||| Sbjct 3352548 AGTGATAGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028287386625280