Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq19069 120 2e-22 seq784 91.5 1e-13 >seq19069 Length=15583329 Score = 120 bits (132), Expect = 2e-22 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| ||| Sbjct 9791976 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAATCCATAAACTGGTCCCAAGTC 9791917 Query 30210 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||||| || ||| |||| || ||| ||| |||| || || | || || || || | Sbjct 9791916 TCCCTCCTCTCTGGTGCTAAAA-CCCTGCTTATCCAGGAATTCACGTGATCCATTAGCAT 9791858 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| ||||| || ||||| | ||||||||||||| ||||| || || || || || | Sbjct 9791857 CCCAAATCTTCACACCCTTAGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 9791800 Query 30329 ACAG 30332 |||| Sbjct 9791799 ACAG 9791796 >seq784 Length=2706615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 112105 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 112164 |||||||||||||| |||| || || |||||| | | ||| | |||||| || || ||| Sbjct 2521490 AGCTCCCTGCTGAGAACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGAATG 2521431 Query 112165 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 2521430 GAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 2521386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408522620925056