Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq776 132 9e-26 >seq776 Length=165087 Score = 132 bits (146), Expect = 9e-26 Identities = 131/167 (78%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 ||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||| Sbjct 44090 GTGTACTCCATGATCTCTGTGCACAGGTTGCTGCTCTTGATGGTCCCCAGGTTCTGCTGG 44149 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||||| | ||| || |||||||||||||||||||||| || ||||| ||| Sbjct 44150 -TTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCCGTCTCGGTCTG 44208 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCC 213693 ||| | | || | |||||| | | |||||| |||||||||| Sbjct 44209 CGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCGCC 44255 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 213174 TAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTT 213233 ||||| || ||||||||||||||||| || || | || |||| |||| || ||||| Sbjct 41115 TAGGGCCCTTGCTCCTTGGCCAGCTCACAACTGGCTTCCAAGGCACCGTAATAAATGGTC 41174 Query 213234 TCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGT 213293 ||||| || | | ||| || || ||||| ||| | |||||| | | |||| | Sbjct 41175 TCAAAGATGTGCTGGTTCAGGAGCTGGGCCTGGGGGCTCTCGAAGGGAAACCTCATCAGG 41234 Query 213294 TGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 ||| |||||||||| ||||| ||||||||||| ||||| | ||| | | |||| || Sbjct 41235 ATGAAGGCATCAGCCAGGCCCTGCACCCCGATGCCAATGGGCCGGTGGCGCCGGTTGGA 41293 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || |||||||| ||||| | ||| | ||| |||||||||||||| Sbjct 39565 TACCTGGAACTCCCCTGAGAGGACCCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGAT 39624 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||||||||| |||| ||||| |||||| || || |||||||| | | ||||| Sbjct 39625 GGACTCGTTGTTGCCCAAGATCTGAGCAGTGGAAGCAGTTGGCATGGGGGAAAGGAGGAG 39684 Query 213035 ACTGTTCCTCACTCCGT 213051 |||||||| || |||| Sbjct 39685 GCTGTTCCTGACACCGT 39701 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || || | ||| || || ||| ||||| |||| | | | Sbjct 45937 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 45996 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || |||| ||| || || || || || |||||||||||| |||||||||| Sbjct 45997 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCCAAGTGCCACGGC 46056 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 46057 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 46087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931310722580480