Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq776 113 8e-20 seq19067 87.8 3e-12 >seq776 Length=165087 Score = 113 bits (124), Expect = 8e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||||| |||| |||| ||||||||||| || |||||||||| |||||||| Sbjct 44073 CCACCTCATCCTTGCTGGTGTACTCCATGATCTCTGTGCACAGGTTGCTGCTCTTGATGG 44132 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 ||||||||| | || || |||||| ||| | ||||||||||||||| |||| Sbjct 44133 TCCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 44192 Query 221850 CGCCAGTCTC 221859 ||| ||||| Sbjct 44193 TGCCCGTCTC 44202 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||||||||| || || ||||| || || || || ||||||| |||||||| || Sbjct 45942 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTC 46001 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 || |||| ||| ||| || | |||||||| ||||| ||||||||||||||| Sbjct 46002 TTTCCCAGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAG 46061 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| ||| | ||| || |||| || || Sbjct 46062 GTAGATGGCAAAAGCCCCAGGTCTCTGGT 46090 >seq19067 Length=13999166 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| |||||||||||||| || |||||||| || ||||| ||||| || || || | Sbjct 10805215 TGGTTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 10805156 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 || | ||| ||| ||| ||||| || ||| ||||||||| || || || ||||| | Sbjct 10805155 GGTTGAAGAAGAGGGGCCTGATGCCTGGACTGACCTTTTCCAATGAACTTATTAGCAGAG 10805096 Query 26003 ACGAGG 26008 | |||| Sbjct 10805095 ATGAGG 10805090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928623363399680