Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1150 111 1e-18 seq904 91.5 1e-12 >seq1150 Length=121153 Score = 111 bits (122), Expect = 1e-18 Identities = 160/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 474504 TTAATACTATTTTTG---ATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 ||| ||||||||||| |||| || | |||||||| |||| ||||||||| | || Sbjct 856 TTATTACTATTTTTGCAGATGCAAAGCGGTTGATTGGGCGTAGATTTGATGATTCAGTTG 915 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATA 474620 |||| ||||||||| || |||||||| | ||| | |||| || ||| | |||| | Sbjct 916 TCCAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTGAATGATGCTGGCAGACCAAAGG 975 Query 474621 T--AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAAT 474678 | || | | |||| | ||||| || || || | || ||| |||||||||| || Sbjct 976 TGCAGGTGGAGTACAAG--GGTGAGACCAAGAGCTTCTACCCAGAAGAAATTTCTTCCAT 1033 Query 474679 GGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGA 474721 ||||||| |||||||||| ||| || ||||||||||| Sbjct 1034 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATATCTTGGA 1076 Score = 93.3 bits (102), Expect = 3e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 2791 GGTATTCCCCCTGCTCCCAGAGGTGTCCCTCAGATTGAAGTCACCTTTGATATTGATGCC 2850 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 ||||| || || || || ||||| Sbjct 2851 AATGGCATCCTCAACGTGTCTGCT 2874 Score = 93.3 bits (102), Expect = 3e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 3816 GGTATTCCCCCTGCTCCCAGAGGTGTCCCTCAGATTGAAGTCACCTTTGATATTGATGCC 3875 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 ||||| || || || || ||||| Sbjct 3876 AATGGCATCCTCAACGTGTCTGCT 3899 >seq904 Length=4018826 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| |||||||| || || ||| || | || || |||| || || | Sbjct 3352372 AGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGC 3352431 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || |||||||||||||| || || | || || ||||| ||||| |||||| Sbjct 3352432 CCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 3352491 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| ||| ||| || || || ||| || | | || || || Sbjct 3352492 TTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTG 3352551 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || ||||| || || || || Sbjct 3352552 ATAGTTTTGCCAGTCAGGGTCTTCACAAAGATCTG 3352586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267361109382656