Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq262 257 2e-63 seq1055 134 2e-26 >seq262 Length=1555650 Score = 257 bits (284), Expect = 2e-63 Identities = 606/909 (67%), Gaps = 7/909 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 337351 TGTGTCGCAAATACTCCTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 337410 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| ||||| | ||||| ||| |||| ||||||| || ||| || ||| || | Sbjct 337411 TATTAGCGAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCCCCTACCCCAAAAA 337467 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || ||||| | || ||||| | ||| | Sbjct 337468 CACAGACAGACCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACAT 337527 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||| ||||| | || | |||||| || ||| | Sbjct 337528 CACCTTCAAAGTACTGCCACTTGACAAATCTGGCCAGTGCATTCATGTCAGAAACGTCAT 337587 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| ||||| | || || | ||| | || |||||| Sbjct 337588 ACTTGT-CACTAGAAGAAACTGCACCTGGAACTTCAGGGATTCTCTGAATTGTTGCCCAC 337646 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| || || || | ||| || ||||||| ||| || Sbjct 337647 AGGTACTCATCTGGGCTGTAGGTATCTTTTGCCCACTCAATGAACTTGAGTATTTTGTTG 337706 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | || | || | |||| | || ||||| || || || || || || Sbjct 337707 TTTTCTAATACATATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 337766 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| ||| ||||| | || | Sbjct 337767 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATACCTGTGTTCTTTATTTTACCATCA 337826 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | |||| | || ||||| || || || | | ||||| ||| || || Sbjct 337827 ATAATCTCGTGGTGTTTTTTCCATCTCACTTCTTTATAAGCAGGCATTTTTTCTGTTTCC 337886 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 || ||||| |||| | || | ||| | | | || || || |||| ||||| | Sbjct 337887 AGGCTGTTTTCACCTTTAAGGGCTTTTAATTTTTCTACTATTTCCTGGTTGGTCTTTATA 337946 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||| ||||| || | ||| || || Sbjct 337947 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTGGAGCTTCTTCTGTAGAGA 338006 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||||||||| ||||||||||| | |||||| ||||| ||||| || ||||| Sbjct 338007 TCTTTCATGCAATTAATGTCTGCCTGCACCCTGCTCCATGAAGCATACACAACACTCTCT 338066 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 338067 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 338125 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 338126 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 338185 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || |||| |||||| || || |||| | ||| || ||||| || || Sbjct 338186 TGATCTTAGAAGTCTATCGAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 338245 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 338246 TGGAAATTC 338254 >seq1055 Length=9946159 Score = 134 bits (148), Expect = 2e-26 Identities = 241/350 (69%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||||||| || || | ||||| |||| |||| |||| | | |||| | Sbjct 3047440 TGTGTCGCAGGTGCTCCGCGAGACACTGGATGGCGGCATCGTCCCCCGAGGGGGCGAACT 3047499 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || || ||| | | | | || | |||| ||||||| || |||| | | Sbjct 3047500 TGTTGGCCAAGAGGTGGGGC---TGCCGGAGCAGCCAGGGCACGTCGCCCACCCCGTAGA 3047556 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 |||||||| || |||| |||| |||| |||||||| | || || | || Sbjct 3047557 TGCAGACGGCGCGCTGGTGCCGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTGGCTGGTGT 3047616 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 |||| || |||||||||||| || | | || | || | |||||||||| | | Sbjct 3047617 CACCCTCCAGGTACTGCCACTTGACCACGCGGGGCAGGGCGTTCATGTCGGAGAGCTGGA 3047676 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| || |||| | ||| || || ||||||||||| || | ||||||||||| | Sbjct 3047677 ACTTGTCGTTCTGGGGCATGGCGCCCGGCACGCCGGGCATGCGGTTGAGGGTGGCCCAGA 3047736 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG 160394 ||| |||||||||||||| |||||||| | ||| || | ||||| |||| Sbjct 3047737 CGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACT-TCCG 3047785 Score = 111 bits (122), Expect = 2e-19 Identities = 189/273 (69%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 160700 CAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTT 160759 ||||||| |||||| || | || ||||||| ||| |||||| ||||| || || | Sbjct 3048089 CAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGGCGAGACCAGGAGGCGTAGACCACCCT 3048148 Query 160760 CTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG 160819 || || |||||||||||||| || ||| || | ||||| || ||| ||| Sbjct 3048149 TTCCAGGCGGCTGGCCACAAAGACATTGGGGAAGCAGGCGACGATGGCCCGCACAGCCTC 3048208 Query 160820 AAAGAACATCTTATCCGCC---TTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGC 160876 ||| | | ||| || | ||||| ||| || || || | |||||| || | Sbjct 3048209 CTGGAAG---TCAGCCGGGGATTTGCTGTCCATGTGGACACAGTAGACGTTCTGTGGTGT 3048265 Query 160877 GTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTA 160936 |||||||| || || | || |||||||||||| || || | ||||| || || ||||| Sbjct 3048266 GTAGATGGACCGCAGAAGCCGCTCGAACATCTCGATTTTGTTGTGGATGACCATGGAGTA 3048325 Query 160937 GGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 ||| || || ||||| | |||||| | ||||| Sbjct 3048326 GGCGATGGGGAACTCTGCCTCCTCCTGGCTCAG 3048358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577081590942720