Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq19067 91.5 2e-13 seq1840 84.2 3e-11 >seq19067 Length=13999166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||| ||||| ||| || || |||||||| || || || || ||| ||||| | |||| Sbjct 10805212 TTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCGGGTTCCTT-TGCTGCTATATTTTGG 10805154 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 ||||||||| |||| || ||||| || || ||| || |||||||||||| | ||||| Sbjct 10805153 TTGAAGAAGAGGGGCCTGATGCCTGGACTGACCTTTTCCAATGAACTTATTAGCAGAGAT 10805094 Query 65206 GAGG 65209 |||| Sbjct 10805093 GAGG 10805090 >seq1840 Length=19535321 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 65437 GCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTT 65496 ||| ||||||| |||||||| ||||||||||| || || || |||||||| |||||| Sbjct 8678024 GCGGAGAATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAGACCAATTTCTTT 8677965 Query 65497 GAGAAGCGAGTTGGGGACTAT 65517 ||||||||||| || || ||| Sbjct 8677964 GAGAAGCGAGTAGGTGAATAT 8677944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596427377807360