Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2447 170 2e-36 seq1834 170 2e-36 seq1057 138 1e-26 seq1851 129 7e-24 seq776 113 6e-19 >seq2447 Length=139237 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 2925 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2984 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 2985 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 3044 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 3045 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 3104 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 3105 GCACCTGCTTCAGCACCTTGTA 3126 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 73771 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 73830 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 73831 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 73890 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 73891 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 73950 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 73951 GCACCTGCTTCAGCACCTTGTA 73972 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 129979 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 129920 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 129919 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 129860 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 129859 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 129800 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 129799 GCACCTGCTTCAGCACCTTGTA 129778 Score = 161 bits (178), Expect = 1e-33 Identities = 157/201 (78%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 1254345 CTGGCC-AGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGAT 1254403 |||||| || |||||| || | ||| |||||||| ||||||||||| |||| ||| Sbjct 445 CTGGCCCAGCTCGCCGGCCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGAT 386 Query 1254404 CGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCAT 1254463 ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| || Sbjct 385 GGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGAT 326 Query 1254464 GTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTG 1254523 ||||||||| || |||||||||| ||| | |||| ||||||||| ||| ||||| Sbjct 325 GTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTG 266 Query 1254524 CACCTGCTTGAGCACCTTGTA 1254544 ||||||||| ||||||||||| Sbjct 265 CACCTGCTTCAGCACCTTGTA 245 >seq1834 Length=942115 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 2483 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2424 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 2423 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 2364 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 2363 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 2304 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 2303 GCACCTGCTTCAGCACCTTGTA 2282 >seq1057 Length=18484 Score = 138 bits (152), Expect = 1e-26 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||||||| ||| ||| || ||| ||||| || ||||||||||| || | | ||| | Sbjct 457 TGGCCAGTTCTCCGGGCAGGAGCAGCCGCACCGCCGTCTGGATCTCCCGGGAGGTGATGG 398 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||| ||||| |||| ||||| || ||||| ||||||| |||| |||| Sbjct 397 TGGAGCGTTTGTTGTAGTGAGCCAGGCGAGAAGCCTCCCCCGCGATGCGCTCGAAGATGT 338 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || || ||||||| ||| | |||| ||||||||| ||| ||||| | Sbjct 337 CGTTGACGAAGGAATTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGAA 278 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| | ||||||||||| Sbjct 277 CCTGCTTCAACACCTTGTAGA 257 Score = 138 bits (152), Expect = 1e-26 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||||||| ||| ||| || ||| ||||| || ||||||||||| || | | ||| | Sbjct 16341 TGGCCAGTTCTCCGGGCAGGAGCAGCCGCACCGCCGTCTGGATCTCCCGGGAGGTGATGG 16282 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||| ||||| |||| ||||| || ||||| ||||||| |||| |||| Sbjct 16281 TGGAGCGTTTGTTGTAGTGAGCCAGGCGAGAAGCCTCCCCCGCGATGCGCTCGAAGATGT 16222 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || || ||||||| ||| | |||| ||||||||| ||| ||||| | Sbjct 16221 CGTTGACGAAGGAATTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGAA 16162 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| | ||||||||||| Sbjct 16161 CCTGCTTCAACACCTTGTAGA 16141 >seq1851 Length=4660414 Score = 129 bits (142), Expect = 7e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || | | | |||||||||||| ||||| ||||| || | | ||| | Sbjct 4435859 TGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGAGGTGATGG 4435800 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | || ||||| || ||| || ||||||| || | |||| Sbjct 4435799 TGGAGCGCTTGTTGTAATGGGCCAGGCGAGAGGCTTCTCCAGCGATGCGCTCAAAGATGT 4435740 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||| | |||| ||||||||| ||| ||||| | Sbjct 4435739 CGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGTGGA 4435680 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 4435679 CCTGCTTCAGCACCTTGTAGA 4435659 >seq776 Length=165087 Score = 113 bits (124), Expect = 6e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 1628169 GATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAG 1628228 |||||| |||||||||||| | | | || |||||||||||||||||| | | | Sbjct 44101 GATCTCTGTGCACAGGTTGCTGCTCTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTGCG 44160 Query 1628229 GTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGAT 1628288 |||| || |||||||| |||||||||||| | ||| |||||| |||||| | ||| ||| Sbjct 44161 GTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCCGTCTCGGTCTGCGACTCGATGAT 44220 Query 1628289 GGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||| |||||| ||| | || ||| || ||| || ||||||| Sbjct 44221 GGCGTACCAGAGCTGCTGGGCCTTCACCACCCGCCGGGCACGGCCCT 44267 Score = 95.1 bits (104), Expect = 1e-13 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| || || || || ||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 50421 GCCAATCCCACCAGCAGACTTGGAGATGAGCGCGCACTGCTTGAGGGTGTCGTAGATCCC 50480 Query 1630242 CTCGATCGAGTCGGCCTTCATG 1630263 |||||| |||| |||||||| Sbjct 50481 CTCGATGCTGTCGTCCTTCATG 50502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105574062365824