Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1561 118 1e-21 seq904 111 1e-19 >seq1561 Length=6025351 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | || || || ||| Sbjct 667478 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGT 667419 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| ||||| || || ||||| || Sbjct 667418 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 667359 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | | |||| || || ||| Sbjct 667358 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 667299 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||||||||| |||| || | |||||| Sbjct 667298 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTGAGGGGAGGC 667251 Score = 109 bits (120), Expect = 5e-19 Identities = 171/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || || ||| Sbjct 666794 ATGCAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 666735 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| ||||| || || ||||| || Sbjct 666734 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAG 666675 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | | |||| || || ||| Sbjct 666674 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 666615 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG---CGGAACTGAG 24940 || || |||||||| || || || | ||| |||| |||| || || | |||||| | Sbjct 666614 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGCGGGGTGGTAACTGAACTG-G 666556 Query 24941 CCA 24943 ||| Sbjct 666555 CCA 666553 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || || || || ||||| || ||| Sbjct 667250 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 667191 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || ||||| || Sbjct 667190 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 667131 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | | |||| || || ||| Sbjct 667130 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 667071 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 667070 ATCCAGAAGGAGTCTACTCTGCATCTTG 667043 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || || || || || || || || ||| Sbjct 667022 ATGCAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 666963 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| ||||| || || ||||| || Sbjct 666962 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAG 666903 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | | |||| || || ||| Sbjct 666902 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 666843 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 666842 ATCCAGAAGGAGTCTACTCTGCATCTTG 666815 >seq904 Length=4018826 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || |||||||| || ||||| || || ||| Sbjct 3352589 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACTATCACTCTCGAGGTTGAGCCCAGT 3352530 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || || || || || Sbjct 3352529 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 3352470 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | |||| || || ||| Sbjct 3352469 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGGCGCACGCTGTCTGACTACAAC 3352410 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || |||||||| || || || |||| Sbjct 3352409 ATCCAGAAGGAATCCACCCTCCATCTTG 3352382 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || ||||| || || ||||| || ||| Sbjct 3352133 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTTGAAGTTGAGCCCAGT 3352074 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || ||||| || Sbjct 3352073 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 3352014 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| || | | | | |||| || || ||| Sbjct 3352013 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTACAAC 3351954 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | || ||| Sbjct 3351953 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 3351906 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || ||| ||| Sbjct 3352361 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGT 3352302 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| ||||| || || || || || Sbjct 3352301 GATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCTGACCAG 3352242 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| || | | | |||| || || ||| Sbjct 3352241 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTACAAC 3352182 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | || ||| Sbjct 3352181 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 3352134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449790344412160