Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2447 223 5e-52 seq1834 223 5e-52 seq1851 179 6e-39 seq1057 179 6e-39 seq1840 98.7 2e-14 seq776 98.7 2e-14 >seq2447 Length=139237 Score = 223 bits (246), Expect = 5e-52 Identities = 203/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 2886 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 2945 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 2946 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 3005 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 3006 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 3065 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 3066 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 3125 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 3126 ACACGTAGATCGAGTA 3141 Score = 223 bits (246), Expect = 5e-52 Identities = 203/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 73732 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 73791 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 73792 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 73851 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 73852 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 73911 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 73912 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 73971 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 73972 ACACGTAGATCGAGTA 73987 Score = 223 bits (246), Expect = 5e-52 Identities = 203/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 130018 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 129959 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 129958 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 129899 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 129898 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 129839 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 129838 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 129779 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 129778 ACACGTAGATCGAGTA 129763 Score = 201 bits (222), Expect = 2e-45 Identities = 198/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||| |||| | |||| |||||| || Sbjct 485 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGCGGTGCTGGCCCAGCTCGCCGGCCA 426 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 425 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 366 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 365 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 306 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 305 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 246 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 245 ACACGTAGATCGAGTA 230 Score = 111 bits (122), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 54000 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 54059 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||| |||||||| ||||||||||| || Sbjct 54060 GCAGCAGCCGCACGGCCGTCTGGATCTCCCG 54090 >seq1834 Length=942115 Score = 223 bits (246), Expect = 5e-52 Identities = 203/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 2522 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 2463 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 2462 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 2403 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 2402 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 2343 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 2342 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 2283 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 2282 ACACGTAGATCGAGTA 2267 >seq1851 Length=4660414 Score = 179 bits (198), Expect = 6e-39 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||||||||| || || ||||||| || || | | Sbjct 4435901 TGTACTTGGTGACAGCCTTGGTACCCTCTGAGACAGCATGTTTGGCCAGCTCTCCTGGGA 4435842 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| |||| | ||| ||| ||||||||| Sbjct 4435841 GCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 4435782 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||| || ||||||| || | ||||||||||| || ||||||| Sbjct 4435781 GGGCCAGGCGAGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 4435722 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 4435721 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGGTGGACCTGCTTCAGCACCTTGT 4435662 Query 1485710 AAAC 1485713 | || Sbjct 4435661 AGAC 4435658 >seq1057 Length=18484 Score = 179 bits (198), Expect = 6e-39 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| || |||||||| |||||||||| ||| ||| Sbjct 499 TGTATTTGGTGACCGCCTTGGTGCCCTCGGAAACGGCGTGTTTGGCCAGTTCTCCGGGCA 440 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| ||||| || ||||||||||| |||| | ||| ||| ||| ||||| | Sbjct 439 GGAGCAGCCGCACCGCCGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGTTTGTTGTAGT 380 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||||| ||||||| |||| ||||||||||| || || |||| Sbjct 379 GAGCCAGGCGAGAAGCCTCCCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAATTCA 320 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| | |||||||| Sbjct 319 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGAACCTGCTTCAACACCTTGT 260 Query 1485710 AAAC 1485713 | || Sbjct 259 AGAC 256 Score = 179 bits (198), Expect = 6e-39 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| || |||||||| |||||||||| ||| ||| Sbjct 16383 TGTATTTGGTGACCGCCTTGGTGCCCTCGGAAACGGCGTGTTTGGCCAGTTCTCCGGGCA 16324 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| ||||| || ||||||||||| |||| | ||| ||| ||| ||||| | Sbjct 16323 GGAGCAGCCGCACCGCCGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGTTTGTTGTAGT 16264 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||||| ||||||| |||| ||||||||||| || || |||| Sbjct 16263 GAGCCAGGCGAGAAGCCTCCCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAATTCA 16204 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| | |||||||| Sbjct 16203 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGAACCTGCTTCAACACCTTGT 16144 Query 1485710 AAAC 1485713 | || Sbjct 16143 AGAC 16140 >seq1840 Length=19535321 Score = 98.7 bits (108), Expect = 2e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||| || |||||||| |||||||||| ||| || ||| Sbjct 8682285 ACCTCCTCCGCCGTCCAGAAGGACGCTTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 8682344 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || |||||||||| | || ||||| |||||| || || |||||||||||| Sbjct 8682345 TACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTTTCCCGCAGCAGCGGCTCG 8682398 >seq776 Length=165087 Score = 98.7 bits (108), Expect = 2e-14 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAG 2071640 || ||| |||||||||||| | | |||| |||||||||||||||||||| | | Sbjct 44101 GATCTCTGTGCACAGGTTGCTGCTCTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTGCG 44160 Query 2071641 GTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGAT 2071700 |||| || |||||||| ||||||||||| | ||||||||| |||||| | || ||| Sbjct 44161 GTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCCGTCTCGGTCTGCGACTCGATGAT 44220 Query 2071701 GGCCGACCA 2071709 ||| |||| Sbjct 44221 GGCGTACCA 44229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914217624372608