Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1561 141 6e-29 seq904 131 1e-25 >seq1561 Length=6025351 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | ||| |||| ||| | |||| |||||||| ||||| ||||| || Sbjct 667252 CCTCCCCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 667311 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| | || ||||| ||||| || || |||||||| | |||||||| | || Sbjct 667312 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 667371 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||||| | | || | ||| ||| ||| || Sbjct 667372 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACC 667431 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 667432 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 667479 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || |||| || | ||| || || || | |||| |||||||| ||||| ||||| Sbjct 666565 TTACCACCCCGCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 666624 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| ||||| | || ||||| ||||| || || |||||||| | |||||||| | Sbjct 666625 GACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGG 666684 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || || ||||| | | || | ||| ||| ||| Sbjct 666685 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCC 666744 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| |||||||| || || | |||||| || |||||||||||| Sbjct 666745 ACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCATG 666795 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| ||||| |||| ||||| ||||| || ||||| Sbjct 667059 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAA 667118 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| | |||||||| | || | || |||||||| | || || |||||| Sbjct 667119 GATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 667178 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| ||| ||| || || | ||| |||||||| || || || || || || Sbjct 667179 CTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGAGTTTTCAC 667238 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 667239 GAAGATCTGCATG 667251 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| ||||| | || ||||| ||||| || || || Sbjct 666831 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 666890 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| | |||||||| | || | || |||||||| | || || ||||| Sbjct 666891 GATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 666950 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | ||| ||| ||| || || | ||| |||||||| || || | |||||| || Sbjct 666951 TTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCAC 667010 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 667011 GAAGATCTGCATG 667023 >seq904 Length=4018826 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || || || | |||| |||||||| ||||| ||||| || Sbjct 3351907 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3351966 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | ||||| | || ||||| ||||| || ||||||||||| | |||||||| | || Sbjct 3351967 AAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGA 3352026 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || || || || || || | ||| ||| ||| | Sbjct 3352027 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 3352084 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| ||| || ||||| || || |||||||| ||||||||||||||| Sbjct 3352085 CTTCAAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3352134 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || || || | |||| |||||||| ||||| ||||| || Sbjct 3352135 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 3352194 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || ||||| | || ||||| ||||| || ||||||||||| | |||||||| | || Sbjct 3352195 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 3352254 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || ||| | || | ||| ||| || || Sbjct 3352255 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCACTGGGTTCAACC 3352314 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 3352315 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3352362 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || || | |||| |||||||| ||||| ||||| || || ||||| | || Sbjct 3352378 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCGTCT 3352437 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| || |||||||| | |||||||| | || | || |||||||| Sbjct 3352438 TCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 3352497 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || | ||| ||| ||| || || | || || | Sbjct 3352498 TGGATCTTGGCTTTCAC--ATTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATAG 3352555 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || || |||||||| ||||||||||||||| Sbjct 3352556 TTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 3352590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325617095965568