Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq1840 95.1 1e-14 >seq1840 Length=19535321 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 ||||| ||||| || | || |||||| ||||| | |||||| |||| | | | ||||| Sbjct 8380596 AGCATATGGGGACCAACATGTGATGGCCTAGATCGTATTGTTGAGCGTTTTAATATGCCA 8380655 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA-GCTTGGT-CA 21242 ||| | ||||| || |||||| || | |||||||||||||| || || | ||| | || Sbjct 8380656 GAGTTGCAAGTTGGTGACTGGATCCTGTTTGAAAACATGGGTGCCTATACTGTTGCTGCA 8380715 Query 21243 GCTCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 | |||| || || || || |||| | |||| || |||||||| || ||| Sbjct 8380716 G--CTTCTACTTTCAATGGATTCCAGAGGCCAACAATACACTATGTGATGTCA 8380766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463435090728960