Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq392 132 9e-26 >seq392 Length=2345782 Score = 132 bits (146), Expect = 9e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | |||||||| || ||||| || |||||||| || ||||| Sbjct 1981038 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTTTTCTTCATC 1981097 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || ||||| || |||| ||||| || || ||||| ||||| || ||||| Sbjct 1981098 CTGAGGAAGAAATTTAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 1981157 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | |||||||| ||| ||||||| || || Sbjct 1981158 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 1981198 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || |||||| |||| | ||||| ||||| |||||||| | |||||||| Sbjct 1983369 GCTTTTTTTGGAGCTCAGATGAACGCATTTATTCATGTCATTATGTACATGTATTATGGA 1983428 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || ||| | || || | ||||||||||| ||| | || ||| Sbjct 1983429 TTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTTTGGTGGAAGCGATACTTGACCATA 1983488 Query 58661 ATGCAATTGGTA 58672 ||||| ||||| Sbjct 1983489 TTGCAACTGGTA 1983500 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || || || || | || ||||| || ||||| || || Sbjct 1983990 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTTTCTATTTATATTGATTGTCCTTT 1984049 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| |||| || || || || |||||||| Sbjct 1984050 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 1984109 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||| | | | || || ||| Sbjct 1984110 TAACTTCTACTATCGGACTTATAAG 1984134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903195826769920