Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1561 150 2e-31 seq904 140 3e-28 >seq1561 Length=6025351 Score = 150 bits (166), Expect = 2e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 667054 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 667113 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| |||||||||||| || |||||||||||||| |||||| |||| Sbjct 667114 GCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 667173 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||||||| Sbjct 667174 ACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGAGTT 667233 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 667234 TTCACGAAGATCTGCATGCCT 667254 Score = 140 bits (154), Expect = 3e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || ||| | ||| || ||||| Sbjct 666591 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 666650 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||||||||| || |||||||||||||| |||||| Sbjct 666651 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTT 666710 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | |||| ||||| |||||||||| || | ||||| ||| ||||| || Sbjct 666711 GGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGT 666770 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 || || || ||||| ||||||||| Sbjct 666771 CAAGGTCTTCACGAAGATCTGCATG 666795 Score = 140 bits (154), Expect = 3e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| || || ||| | ||| || ||| Sbjct 667273 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGC 667332 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| |||||||||||| || |||||||||||||| |||| Sbjct 667333 TGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATC 667392 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| ||||||| || || | ||||| ||| ||||| Sbjct 667393 TTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCA 667452 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || ||||| ||||||||| Sbjct 667453 GTCAGGGTCTTCACGAAGATCTGCATG 667479 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 666826 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 666885 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||||||||| || |||||||||||||| |||||| |||| Sbjct 666886 GCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 666945 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| |||||||||| || | ||||| ||| ||||| |||| || Sbjct 666946 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTC 667005 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 667006 TTCACGAAGATCTGCATG 667023 >seq904 Length=4018826 Score = 140 bits (154), Expect = 3e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| ||| || ||| | ||| || ||||| Sbjct 3351930 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCTTCCAGCTG 3351989 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||||||||| || |||||||||||||| |||||| Sbjct 3351990 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 3352049 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || || | ||||| || ||||| || Sbjct 3352050 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATAGTCTTGCCAGT 3352109 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 3352110 CAGGGTCTTCACAAAGATCTGCATG 3352134 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || ||| | ||| || ||||| Sbjct 3352158 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCCAGCTG 3352217 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| ||||||||| || || |||||||||||||| |||||| Sbjct 3352218 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATCTT 3352277 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | || || |||| || || |||| ||||| ||| ||||| || Sbjct 3352278 GGCCTTCACGTTCTCGATGGTATCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCAGT 3352337 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 3352338 CAGGGTCTTCACAAAGATCTGCATG 3352362 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || |||| | ||| || ||||| Sbjct 3352386 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCGTCTTCCAGCTG 3352445 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || |||| ||||||||| || || |||||||||||||| |||||| Sbjct 3352446 CTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 3352505 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | | ||| | ||||| ||||||| || |||| |||| |||||||| || Sbjct 3352506 GGCTTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATAGTTTTGCCAGT 3352565 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 3352566 CAGGGTCTTCACAAAGATCTGCATG 3352590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483305552481280