Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq262 183 4e-41 seq1055 131 2e-25 >seq262 Length=1555650 Score = 183 bits (202), Expect = 4e-41 Identities = 577/886 (65%), Gaps = 25/886 (3%) Strand=Plus/Plus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || ||||| || ||||| | ||| || ||| | | ||||| || || ||||| Sbjct 337404 TCAAACTTATTAGCGAAGAAGTGGTGGT--TTCGT-AGCATCCAGTTCAGGTCCCCTACC 337460 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || ||||| ||||| || || ||||| || || || | || || | | Sbjct 337461 CCAAAAACACAGACAGACCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTG 337520 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||| || || |||| |||||||| || || || | | || | |||||| || Sbjct 337521 GACACATCACCTTCAAAGTACTGCCACTTGACAAATCTGGCCAGTGCATTCATGTCAGAA 337580 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||| ||||||| |||| || | || || || ||||| | || | |||||| | || Sbjct 337581 ACGTCATACTTGT-CACTAGAAGAAACTGCACCTGGAACTTCAGGGATTCTCTGAATTGT 337639 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||||| || ||||| || || || || || | |||||| ||||||| ||| Sbjct 337640 TGCCCACAGGTACTCATCTGGGCTGTAGGTATCTTTTGCCCACTCAATGAACT---TGAG 337696 Query 162420 CGTTTTATCGTATAGAATGTAAGAGACGTAGGAC-------CTGGTCACAATAAAGTACG 162472 |||| | || | | ||| | | | || ||| | || | ||| || | Sbjct 337697 TATTTTGTTGTTT----TCTAATACATATTCTACAAATCTTCTGCTAACTACAAAATAGG 337752 Query 162473 CGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGA 162532 | ||||||||||| | || | | | ||| || | | ||||||| ||| ||||| Sbjct 337753 CACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATACCTGTGTTCT 337812 Query 162533 CTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACG 162592 || | || || | | | |||| || |||| || | ||| | || | Sbjct 337813 TTATTTTACCATCAATAATCTCGTGGTGTTTTTTCCATCTCACTTCTTTATAAGCAGGCA 337872 Query 162593 GGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 | ||| || || || ||||| ||| | ||| || | | || || || Sbjct 337873 TTTTTTCTGTTTCCAGGCTGTTTTCACCTTTAAGGGCTTTTAATTTTTCTACTATTTCCT 337932 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | |||||||| | |||||||| |||| ||||| || || | |||||||| || || Sbjct 337933 GGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTGGAGC 337992 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | || ||| ||||| | | || || | || ||||| || | ||||| || || | Sbjct 337993 TTCTTCTGTAGAGATCTTTCATGCAATTAATGTCTGCCTGCACCCTGCTCCATGAAGCAT 338052 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 |||| || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| Sbjct 338053 ACACAACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 338112 Query 162833 TCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 |||| || || | || | || || ||| | || || || | |||||| | || Sbjct 338113 TCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATGCAGTAAAAAT 338169 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 |||||||||| ||||| | || || | ||| |||| |||||| || || || | |||| Sbjct 338170 TCTGAGGGGCATAGATTGATCTTAGAAGTCTATCGAGCATCTCAATTTTGTGATAAACCA 338229 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGA 162995 | || || || || || || || || || || || |||||||| Sbjct 338230 CTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAGA 338275 >seq1055 Length=9946159 Score = 131 bits (144), Expect = 2e-25 Identities = 265/389 (68%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 |||| ||| | ||||| | ||| || ||||||| ||| || ||||| |||| Sbjct 3047964 TCGGACTCCATGCTGTTCTGCCCCTGCAGCACCTTCAGGGCACGGACAATCTCGGCATTG 3048023 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 ||||| | ||| || || ||||||||| || | ||||| ||| ||| | | Sbjct 3048024 GTCTTGATGGGGAAATCAGTGCCGCAGGTGTTGAGGACATAGCGCCATGGCACGGGGC-T 3048082 Query 162718 CCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 | | | ||| ||||| | ||||| || || ||||| | |||| ||| || ||||| || Sbjct 3048083 CTGCAACAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGGCGAGACCAGGAGGCGTAGAC 3048142 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || || |||| | |||| |||||||||||| ||| || | || || || ||| Sbjct 3048143 CACCCTTTCCAGGCGGCTGGCCACAAAGACATTGGGGAAGCAGGCGACGATGGCCCGCAC 3048202 Query 162837 GGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 ||| ||| || | || | ||| || || | ||| || ||||| | ||||| Sbjct 3048203 AGCCTCCTGGAAGTCAGCCGGG--GATTTGCTGTCCATGTGGACACAGTAGACGTTCTGT 3048260 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 || | |||||||| || ||| | | |||||||||||| || || | ||| | || || Sbjct 3048261 GGTGTGTAGATGGACCGCAGAAGCCGCTCGAACATCTCGATTTTGTTGTGGATGACCATG 3048320 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTC 162983 || || || ||||||||||| |||||||| Sbjct 3048321 GAGTAGGCGATGGGGAACTCTGCCTCCTC 3048349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578294101811200