Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1561 98.7 7e-16 seq904 98.7 7e-16 >seq1561 Length=6025351 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | ||| | ||| ||||| ||| || || |||||||| || || Sbjct 666796 CCACCCCTCAGACGAAGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 666855 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || ||||| |||| | |||||| || | || Sbjct 666856 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 666915 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| ||| |||||| || | ||||| Sbjct 666916 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTTTCAATGGTGTCACTGGGCTCCAC 666974 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||| || || || || ||||||||||| Sbjct 666975 CTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 667022 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || |||||| | || || | ||| | ||| || ||| || || || |||||||| || Sbjct 666564 GTTACCACCCCGCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 666623 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || || ||||| |||| |||| || || || ||||| |||| | |||||| || | Sbjct 666624 AGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGG 666683 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATT 33697 || | ||||| ||||| || || || | ||| ||| |||||| || | | Sbjct 666684 GGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTTTCAATGGTGTCACTGGGCT 666742 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| || || ||||| || || || || ||||||||||| Sbjct 666743 CCACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 666794 >seq904 Length=4018826 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||| | ||| || ||| || || || |||||||| || || Sbjct 3352363 CCACCCCTGAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 3352422 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || ||||| ||||| |||| | |||||| || | || Sbjct 3352423 AGCGTGCGCCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 3352482 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||||| ||| || | |||||| || | || || Sbjct 3352483 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCA-CATTCTCGATGGTGTCACTGGGCTCAAC 3352541 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 || | ||||| ||||| || || | || || |||||||||||||| |||| Sbjct 3352542 CTCGAGAGTGATAGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT-GTTG 3352593 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | ||| || ||| || || || |||||||| ||||| Sbjct 3351907 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3351966 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| |||| |||| || || || || || |||| | |||||| || | || Sbjct 3351967 AAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGA 3352026 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||| || | || || Sbjct 3352027 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCAAC 3352085 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 3352086 TTCAAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328627596042240