Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1561 98.7 2e-15 >seq1561 Length=6025351 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| ||||||| || |||||| | || Sbjct 667235 AAAACTCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGTGACACCATTGAGAAC 667176 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || |||||| Sbjct 667175 GTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTGATCTTC 667116 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | || || | || |||||| ||||||| |||||| Sbjct 667115 GCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCT 667056 Query 206365 ACTCTTCACCTTGT 206378 ||||| || ||||| Sbjct 667055 ACTCTGCATCTTGT 667042 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || || ||||| |||| ||||| |||||| | ||| || ||| Sbjct 666998 ACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATTGAAAATGTCAAGGCC 666939 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| ||| || ||| || || || ||||| || || ||| Sbjct 666938 AAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTGATCTTTGCTGGCAAG 666879 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| ||||||| || | || || | || |||||| ||||||| ||||||||||| || Sbjct 666878 CAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCTACTCTGCAT 666819 Query 206374 CTTGT 206378 ||||| Sbjct 666818 CTTGT 666814 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || ||||||||||| ||||||| || ||||||| || || | ||||||||| Sbjct 667042 ACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 667101 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || |||||||| |||| Sbjct 667102 AGCTGCTTGCCAGCGAAGATCAGCC 667126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181532010269312