Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1561 114 1e-20 seq904 100 3e-16 >seq1561 Length=6025351 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| || || || ||||||||||| || ||||||||||| | |||| | Sbjct 666577 AGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 666636 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| |||| | |||||| ||||| || |||||||| Sbjct 666637 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 666696 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | ||||| | ||||| || || || Sbjct 666697 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 666756 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || ||||| || ||||| Sbjct 666757 ATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 666794 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | ||| || || || || || ||||| || ||||||||||| Sbjct 666796 CCACCCCTCAGACGAAGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 666855 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| ||||| |||| | |||||| ||||| || Sbjct 666856 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 666915 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || ||||| || | ||||| | ||||| Sbjct 666916 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 666975 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 666976 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 667022 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| | ||| || ||||||||||| || ||||||||||| Sbjct 667252 CCTCCCCTCAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 667311 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| ||||| |||| | |||||| ||||| || Sbjct 667312 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 667371 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | || || Sbjct 667372 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACC 667431 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || | || ||||| || || || | || || ||||| || ||||| || Sbjct 667432 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 667481 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | ||| || || || || || ||||| || ||||||||||| Sbjct 667024 CCACCCCTCAGACGAAGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 667083 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | |||||| ||||| || Sbjct 667084 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGA 667143 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | || || Sbjct 667144 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACT 667203 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | |||||| ||||| || ||||| Sbjct 667204 TCCAGGGTGATGGTCTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 667250 >seq904 Length=4018826 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || ||||| || | ||| || || || ||||||||||| || ||||||||||| | | Sbjct 3352363 CCACCCCTGAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 3352422 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | ||| | ||| || ||||| || || ||||| |||| | |||||| || || || Sbjct 3352423 AGC-GTGCGCCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 3352481 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || || || || || ||| || || | ||||| | || || Sbjct 3352482 AATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTCACTGGGCTCAAC 3352541 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| || ||||| || || | || || || || || ||||| ||| Sbjct 3352542 CTCGAGAGTGATAGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 3352593 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||||||||| || |||||||||||| Sbjct 3351907 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3351966 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| || || |||| | |||||| ||||| || Sbjct 3351967 AAGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGA 3352026 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 3352027 ATGCCTTCCTTGTCCTGGATCTT 3352049 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||||||||| || ||||||||||| Sbjct 3352135 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 3352194 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || || |||| | |||||| || || || Sbjct 3352195 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 3352254 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || || || || | || || | ||| || Sbjct 3352255 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCACTGGGTTCAACC 3352314 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || || || || ||||| Sbjct 3352315 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505277913021440