Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq19069 113 4e-20 seq1840 109 4e-19 seq19067 95.1 1e-14 >seq19069 Length=15583329 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||||||| || ||| | || ||||| || ||| ||||||||| ||| Sbjct 9796343 TGATGGCTTTGCCACCATGCCATGCCCTTTGCCAGTTCTATGTTCAAAATGGTGAATTGT 9796402 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || ||||| || || || | Sbjct 9796403 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCGTTCAATATTGCCA 9796462 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 9796463 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 9796499 >seq1840 Length=19535321 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 8681429 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 8681370 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 8681369 ATACATTCTGAAATGTACAGTCTTCTCATCGACACCTACATTAAAGAT 8681322 >seq19067 Length=13999166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||| |||||||| |||||||| || || ||||| || ||||||||| Sbjct 10805213 GTTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 10805154 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 || ||||| | || |||||||||| |||| ||||| ||||| | || || | ||| Sbjct 10805153 TTGAAGAAGAGGGGCCTGATGCCTGGACTGACCTTTTCCAATGAACTTATTAGCAGAGAT 10805094 Query 44255 GA 44256 || Sbjct 10805093 GA 10805092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397363615327360