Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq776 95.1 1e-14 >seq776 Length=165087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| || |||||||| |||||||| ||||| |||||||| || |||||| Sbjct 50519 AGCTGTTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGGATCTACGACACCCTCAAG 50460 Query 19313 GAGTGCGCGCACATCTCCAAGT 19334 ||||||||| ||||||||||| Sbjct 50459 CAGTGCGCGCTCATCTCCAAGT 50438 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 79670 ACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCT 79729 ||||||||||| ||||||||| |||||| || |||||||| |||||||| |||||||| Sbjct 50438 ACTTGGAGATGAGCGCGCACTGCTTGAGGGTGTCGTAGATCCCCTCGATGCTGTCGTCCT 50497 Query 79730 TCATAGCGACCAGGAAGCAGCT 79751 |||| | |||||| ||||| Sbjct 50498 TCATGCACAGCAGGAAACAGCT 50519 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| ||||| |||||||||| || ||||||||| || | ||||| ||||||||| Sbjct 44095 CTCCATGATCTCTGTGCACAGGTTGCTGCTCTTGATGGTCCCCAGGTTCTGCTGGTTGCT 44154 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||| ||| |||| |||||||||| |||||| || || || ||||| Sbjct 44155 CTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCCGTCTC 44202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548394031687680