Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19067 104 3e-17 seq607 91.5 2e-13 seq776 84.2 2e-11 >seq19067 Length=13999166 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | || |||||||| || || | ||||||| Sbjct 10805092 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10805151 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 |||||||| || ||| |||||||| |||||||||||||| ||| |||||||| Sbjct 10805152 AACCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCA 10805211 Query 74892 AC 74893 || Sbjct 10805212 AC 10805213 >seq607 Length=13077998 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| || ||||||||||| ||||| ||| | ||||| || || Sbjct 4810632 GTGAAAATATAGCGAGGACTGGCAGCATCCTTTCCACCGTGAAGCCTGGTACCAAACTGA 4810573 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | ||| || || | ||||| ||| |||||||| ||||||||||||||| Sbjct 4810572 CCAATAGGTTGCAACAGATTAACATTGTTACTGCCAACAAAGTTCTGAGCCAAGTTGACA 4810513 Query 117425 ATCGT 117429 || || Sbjct 4810512 ATAGT 4810508 >seq776 Length=165087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| ||| | | || |||||||| || || || ||||||||| |||||||||||||| | Sbjct 39685 CCTCCTCCTTTCCCCCATGCCAACTGCTTCCACTGCTCAGATCTTGGGCAACAACGAGTC 39626 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 ||||||| ||||| | ||||||||| ||| || ||| |||| ||||| Sbjct 39625 CATCGAGCCCTACACCAGTAACATCTACACACGCAGGGTCCTCTCAGGGGAGTT 39572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547085543705600