Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq904 170 2e-37 seq1561 161 1e-34 seq776 102 9e-17 >seq904 Length=4018826 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||||||| || ||||| |||||| | || Sbjct 3352133 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTTGAAGTTGAGCCCAGT 3352074 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 3352073 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 3352014 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || || | || ||| | | ||||| || Sbjct 3352013 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCTTGTCCGACTACAAC 3351954 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || |||| || | ||||| Sbjct 3351953 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 3351907 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||| ||||| ||||| ||||||||| | || Sbjct 3352589 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACTATCACTCTCGAGGTTGAGCCCAGT 3352530 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| |||| || || || ||||||||||| || ||||| || |||||| Sbjct 3352529 GACACCATCGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 3352470 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || || || | ||||| || Sbjct 3352469 CAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGGCGCACGCTGTCTGACTACAAC 3352410 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || | ||||| | ||||| Sbjct 3352409 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTCCGTCTCAGGGGTGG 3352363 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || |||||||| | || Sbjct 3352361 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGT 3352302 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||| || || || |||||||| || ||||| || |||||| Sbjct 3352301 GATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCTGACCAG 3352242 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || || | || || || | ||||| || Sbjct 3352241 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTACAAC 3352182 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || |||| || | ||||| Sbjct 3352181 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 3352135 >seq1561 Length=6025351 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || || ||||| ||| | || Sbjct 666794 ATGCAGATCTTCGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 666735 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || || |||||||| || ||||| || |||||| Sbjct 666734 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAG 666675 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 666674 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 666615 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || |||| || || ||||| Sbjct 666614 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGCGGGGTGG 666568 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || | ||||||||| | || Sbjct 667478 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGT 667419 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || ||||||||||| || ||||| || |||||| Sbjct 667418 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 667359 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 667358 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 667299 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || || | || ||||||| Sbjct 667298 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCT 667261 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || |||||||| || || || || |||||| | || Sbjct 667250 ATGCAGATCTTCGTGAAAACTCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 667191 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || ||||| || |||||| Sbjct 667190 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 667131 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 667130 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 667071 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| ||||| || | ||||| | ||||| Sbjct 667070 ATCCAGAAGGAGTCTACTCTGCATCTTGTGCTTCGTCTGAGGGGTGG 667024 >seq776 Length=165087 Score = 102 bits (112), Expect = 9e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC--GACTCCA 80632 ||||| ||| | | || || || || || | | ||||||||||||||| | || | Sbjct 41094 GGAGAACCCTCATAGGTTTCATAGGGCCCTTGCTCCTTGGCCAGCTCACAACTGGCTTCC 41153 Query 80633 TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGT 80692 | ||| ||| ||||||| |||||||| | || ||||| | ||||| ||| Sbjct 41154 AA--GGCACCGTAATAAATGGTCTCAAAGATGTGCTGGTTCAGGAGCTGGGCCTGGGGGC 41211 Query 80693 CGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGA 80752 ||||| | || | ||||| ||||| | |||||||||||||| || |||||| | | Sbjct 41212 TCTCGAAGGGAAACCTCATCAGGATGAAGGCATCAGCCAGGCCCTGCACCCCGATGCCAA 41271 Query 80753 TCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 | || ||||||||| ||| || |||||||||| ||| Sbjct 41272 TGGGCCGGTGGCGCCGGTTGGAGCGCTCGGCCTGCGG 41308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570174438000640