Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1055 259 6e-64 seq2130 143 4e-29 >seq1055 Length=9946159 Score = 259 bits (286), Expect = 6e-64 Identities = 664/1006 (66%), Gaps = 34/1006 (3%) Strand=Plus/Minus Query 13602 CCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTAT 13661 || ||||||||| ||||||||||| ||||||| |||| | | | || ||| Sbjct 3048430 CCTGGAGACTACCTGAACATGACGAAGGACTGCGGCAACTTCAAGGAGACCCGGCGGTTC 3048371 Query 13662 CTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATC 13721 | | | || ||||||| ||| |||| ||||| |||||||||||||| || || ||| Sbjct 3048370 ATTGAGTTCCCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATC 3048311 Query 13722 CACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTC 13781 ||| |||| ||||||||||||||||| || ||| || |||||||| | || |||||| || Sbjct 3048310 CACAACAAAATCGAGATGTTCGAGCGGCTTCTGCGGTCCATCTACACACCACAGAACGTC 3048251 Query 13782 TACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGGCCA 13839 ||||| |||||| ||||| ||| ||| | || ||| | || ||| || ||||| Sbjct 3048250 TACTGTGTCCACATGGACAGCAAATCCCCGGCTGACTTC--CAGGAGGCTGTGCGGGCCA 3048193 Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCT 13899 ||| | |||||||| || || ||||| ||| ||| | ||||| |||| || Sbjct 3048192 TCGTCGCCTGCTTCCCCAATGTCTTTGTGGCCAGCCGCCTGGAAAGGGTGGTCTACGCCT 3048133 Query 13900 CCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCA 13959 ||||| |||| ||||||| ||||||| ||||||| ||||||| |||||| Sbjct 3048132 CCTGGTCTCGCCTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCGTGC 3048073 Query 13960 AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGA 14019 ||| | || | |||||| ||||| | || ||||| |||||||||| |||| Sbjct 3048072 CATGGCGCTATGTCCTCAACACCTGCGGCACTGATTTCCCCATCAAGACCAATGCCGAGA 3048013 Query 14020 TCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCC- 14078 | || || || ||||||| ||| || ||||| | ||||| |||| | |||| Sbjct 3048012 TTGTCCGTGCCCTGAAGGTGCTGCAGGGGCAGAACAGCATGGAGTCCGAG---AAGCCCT 3047956 Query 14079 --AACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGG 14136 | ||||| | | ||| ||| || ||| | || |||| || Sbjct 3047955 CGGCTCTCAAGCGGGAACGC---------TGGC-----GTTACCATC-ACGAAGTGGGGG 3047911 Query 14137 --TCAA-------CACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTG 14187 || | || | |||| | || ||||| || | ||| |||||| || Sbjct 3047910 ATTCCATCTCCCGGACTGCCAGGGAGAAACTGCCGCCACCCCACAGCTCCCCCATGTTCA 3047851 Query 14188 CGGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGC 14247 | || || || ||| | | |||||| ||||| || ||| | | || || || || Sbjct 3047850 CAGGCAATGCCTACATCGTGGTCACGCGGGACTTTGTGCAGCACATCTTCGAGAACCCCA 3047791 Query 14248 CGGTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGG 14307 ||| | | || | | ||| | ||||||| |||||||||||||||||| | |||| Sbjct 3047790 CGGCGCGGAAGTTCCTCGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTCTGGG 3047731 Query 14308 CCACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACA 14367 ||||| | | | ||| ||| ||| || | || ||| ||| ||||| | | Sbjct 3047730 CCACCCTCAACCGCATGCCCGGCGTGCCGGGCGCCATGCCCCAGAACGACAAGTTCCAGC 3047671 Query 14368 CCTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCA 14427 ||| |||||| ||| | | | | ||||||||||| ||| ||||| || | || Sbjct 3047670 TCTCCGACATGAACGCCCTGCCCCGCGTGGTCAAGTGGCAGTACCTGGAGGGTGACACCA 3047611 Query 14428 AGAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCG 14487 | || || | |||||||| ||| |||| ||| | |||| ||||||||| || Sbjct 3047610 GCCAGGGCGCGCCCTACCCGCCCTGCACCGGCCGGCACCAGCGCGCCGTCTGCATCTACG 3047551 Query 14488 GGTCCGGCGACGTGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACG 14547 || ||||||||| |||||| | || ||||| || ||||||||||||| | Sbjct 3047550 GGGTGGGCGACGTGCCCTGGCTGCTCCGGCAGCCCCACCTCTTGGCCAACAAGTTCGCCC 3047491 Query 14548 ACGAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593 | | |||||| |||| | | ||||| | ||| || |||| Sbjct 3047490 CCTCGGGGGACGATGCCGCCATCCAGTGTCTCGCGGAGCACCTGCG 3047445 >seq2130 Length=11326115 Score = 143 bits (158), Expect = 4e-29 Identities = 261/380 (69%), Gaps = 14/380 (4%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATG 13739 || |||| || || |||||||||||| || ||| || |||||| | |||| Sbjct 8236188 GAGGAGGCCGCCTTCCCCATCGCCTACG---TCATGACCCTGCACAAGGAGTTTGAGACC 8236244 Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 || |||| ||| | ||||| ||||| || || ||| |||||||| |||||||||| Sbjct 8236245 TTTGAGCAGCTCTTCAGGGCGGTCTACATGCCCCAAAACATCTACTGCATCCACGTGGAT 8236304 Query 13800 TCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 ||||| | || | ||| | || || | | | | | |||||||| ||| Sbjct 8236305 GCCAAGGCGCCCGCCCGCTTCCAGCAGGCAGTGGGGCGCCTGGTGGGCTGCTTCCCCAAC 8236364 Query 13860 GTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC----GCGTGCA 13915 | ||||||| |||| | | | ||||| |||||| |||||| || ||| Sbjct 8236365 GCCTTCCTGGCCTCCCGGGCGGAGCAGGTGGTCTACGGC----GGAGTCTCACGCCTGCG 8236420 Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975 ||| |||||| ||||||| ||||||| ||||| |||| ||| | |||||||| Sbjct 8236421 GGCTGACCTCCACTGCATGAGGGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTACCTGCT 8236480 Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAA 14035 |||| ||||| ||||||||| | |||||||||| ||||||||| ||| |||||| Sbjct 8236481 CAACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCGGCTGCTGAA 8236540 Query 14036 GGCCCTGGGCGGCAAGAACG 14055 || | | || || ||||||| Sbjct 8236541 GGGCTTCGGGGGGAAGAACG 8236560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658582156574720