Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq19069 125 6e-24 >seq19069 Length=15583329 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || || ||||| |||| ||||| ||||| || ||||| || Sbjct 9796340 CTCTGATGGCTTTGCCACCATGCCATGCCCTTTGCCAGTTCTATGTTCAAAATGGTGAAT 9796399 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| ||||| |||||||| | || ||||| ||||| |||| ||||||||||| |||| Sbjct 9796400 TGTCTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCGTTCAATATTG 9796459 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGG 34735 | || || | |||||||| |||||||| || |||||| |||| Sbjct 9796460 CCAGCTATTCACTGCTCACATACATGATTGCCCATGTCACGGGG 9796503 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6610 CCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCAC 6669 |||| |||||| || |||||||| |||||||| | || || ||||| ||||||||||| Sbjct 9796503 CCCCGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAACGGCAC 9796444 Query 6670 CCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGAC 6729 |||| ||||| ||||| || | |||||||| ||||| |||| || ||||| || Sbjct 9796443 TCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTTGAAC 9796384 Query 6730 GTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 ||||| ||||| |||| ||||| || || | |||||||||| Sbjct 9796383 ATAGAACTGGCAAAGGGCATGGCATGGTGGCAAAGCCATCAGAG 9796340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||| |||||||| ||||| ||| | || || || || || | Sbjct 9791822 CCAAAGAGCTCTCTGCTAAGGGTGTGAAGATTTGGGATGCTAATGGATCACGTGAATTCC 9791881 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| || | | |||||||| |||||||| || || || || |||| Sbjct 9791882 TGGATAAGCAGGGTTTTAGCACCAGAGAGGAGGGAGACTTGGGACCAGTTTATGGATTCC 9791941 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 9791942 AGTGGAGGCACTTTGGAGCAGAATA 9791966 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || |||||||| |||||||| Sbjct 9791966 TATTCTGCTCCAAAGTGCCTCCACTGGAATCCATAAACTGGTCCCAAGTCTCCCTCCTCT 9791907 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | || ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 9791906 CTGGTGCTAAAACCCTGCTTATCCAGGAATTCACGTGATCCATTAGCATCCCAAATCTTC 9791847 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | |||||||| |||| Sbjct 9791846 ACACCCTTAGCAGAGAGCTCTTTGG 9791822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448155534243840