Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq904 95.1 8e-15 >seq904 Length=4018826 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || ||||| ||||||||||| ||||| || Sbjct 3352592 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACTATCACTCTCGAGGTTGAGCCC 3352533 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || || ||||| ||||| | || || || Sbjct 3352532 AGTGACACCATCGAGAATGTGAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCTGA 3352474 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| || || || |||||||||| ||||| | || || Sbjct 3352473 CCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGGCGCACGCTGTCTGACTA 3352414 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 3352413 CAACATCCAGAAGGAATCCAC 3352393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337931033048576