Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq19069 102 7e-17 seq784 91.5 1e-13 >seq19069 Length=15583329 Score = 102 bits (112), Expect = 7e-17 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 || |||||||||||||| || || || ||||||| ||||||||| || ||| |||| || Sbjct 9791954 AAGTGCCTCCACTGGAATCCATAAACTGGTCCCAAGTCTCCCTCCTCTCTGGTGCTAAAA 9791895 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || ||||| | Sbjct 9791894 -CCCTGCTTATCCAGGAATTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTAGC 9791836 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| ||||| || || || || || ||||| Sbjct 9791835 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 9791796 >seq784 Length=2706615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 114287 AGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 114346 |||||||||||||| |||| || | |||||| | | ||| | |||||| || || ||| Sbjct 2521490 AGCTCCCTGCTGAGAACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGAATG 2521431 Query 114347 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 2521430 GAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 2521386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406068791425792