Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq19069 114 1e-20 >seq19069 Length=15583329 Score = 114 bits (126), Expect = 1e-20 Identities = 139/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| || |||||||| ||||| || || || ||||||| ||| Sbjct 9791976 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAATCCATAAACTGGTCCCAAGTC 9791917 Query 27549 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||||| || ||| |||| || ||| ||| |||| || || | || || || || | Sbjct 9791916 TCCCTCCTCTCTGGTGCTAAAA-CCCTGCTTATCCAGGAATTCACGTGATCCATTAGCAT 9791858 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||| ||||| || ||||| | ||||||||||||| ||||| || || || || || | Sbjct 9791857 CCCAAATCTTCACACCCTTAGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 9791800 Query 27668 ACAG 27671 |||| Sbjct 9791799 ACAG 9791796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369421311746432