Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1561 136 9e-27 seq904 136 9e-27 >seq1561 Length=6025351 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||||||||| || ||||||||||| || | | || | ||||||| Sbjct 667039 AGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 667098 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||||||||||||| | | || |||||||| || Sbjct 667099 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 667158 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| ||||| || || || Sbjct 667159 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATG 667215 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| |||||||||| |||||| Sbjct 667216 GTCTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 667250 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||||||||| || ||||||||||| || | | || | ||| ||| Sbjct 666811 AGCACAAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 666870 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| ||| Sbjct 666871 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCT 666930 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| | || | | |||| ||| ||| || || || || || Sbjct 666931 TGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 666987 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||||||||||| |||||| Sbjct 666988 GTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 667022 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | || | ||| ||| Sbjct 666583 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 666642 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| ||| Sbjct 666643 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCT 666702 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| | || | | |||| ||| ||| || || || || || Sbjct 666703 TGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 666759 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||||||||||| |||||| Sbjct 666760 GTCTTGCCTGTCAAGGTCTTCACGAAGATCTGCAT 666794 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| || | | || | ||| ||||| | Sbjct 667272 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCA 667330 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| |||||||||||||| | | || |||||||| || || | Sbjct 667331 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGA 667390 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| | || | | |||| ||| ||| || || | || || || | Sbjct 667391 TCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCAACCTCCAAGGTGATGGTCT 667447 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || || ||||||||||||| |||||| || Sbjct 667448 TGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 667481 >seq904 Length=4018826 Score = 136 bits (150), Expect = 9e-27 Identities = 170/230 (74%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| |||||||| || || || || || ||||||||||| || | | || Sbjct 3352368 CCTGAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGCGT 3352427 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | ||| ||||| || ||||| || || ||||| |||||||||||||| | | || Sbjct 3352428 GCGCCCGTCTTCCAGCTGCTTT--CCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATG 3352485 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057 |||||||| || || || || ||| ||| |||| | | |||| ||| ||| || Sbjct 3352486 CCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCGATGGTGTC---ACTGGGCTCAACC 3352542 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| ||||||||||| || || |||||||| |||| |||||| || Sbjct 3352543 TCGAGAGTGATAGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 3352592 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| || || | ||| ||| Sbjct 3351922 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCGTCT 3351981 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||||||||||||| | | || |||||||| || Sbjct 3351982 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 3352041 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| |||||||| || ||| Sbjct 3352042 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACTTCAAGGGTGATA 3352098 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 3352099 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352133 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | ||| | ||| ||| Sbjct 3352150 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 3352209 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||||||||||||| | | || |||||||| ||| Sbjct 3352210 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 3352269 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | | || ||| || || || || || || Sbjct 3352270 TGGATCTTGGCCTTCACGTTCTCGATGGTATC---ACTGGGTTCAACCTCGAGGGTGATG 3352326 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 3352327 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3352361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153538852349312