Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetura_20pelagica_20[refseq_20GCF_5F000747805.1_202014-09-04] 19,072 sequences; 1,119,188,094 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1569 167 3e-36 seq1833 136 6e-27 >seq1569 Length=1129839 Score = 167 bits (184), Expect = 3e-36 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || |||| || || |||||||| ||||| ||| ||| ||||| || || |||||||| Sbjct 528854 ATAAGTCTGGTTGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 528795 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || || |||| |||||||||||| |||||||| || ||||||||||| || || || Sbjct 528794 ACGTCACAGACCCGGTTGTGTTCCCTCAGCCAGATCGTAGCGTACATCATCAGGCCTGGG 528735 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || || || || | ||||| Sbjct 528734 ACCAAACCAAACACCTCCTGCCCCACAGAAAACTGCAGGTGCTCAGGAACGTGAGGAGGG 528675 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| ||| ||||||||||| || || |||||| Sbjct 528674 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTGGGTGGATACATTTCTCCATCGATCATC 528615 Query 9484 TG 9485 || Sbjct 528614 TG 528613 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || ||||||||||||||||||||| | ||||||||||| |||| Sbjct 530764 AAGCCCACTTTCCCACCAAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATCGCGTTG 530705 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || || || |||||||| || || || | ||| | ||| | || ||||||||| Sbjct 530704 CCCATCAGTCCCTTCAGGGAGAAAGGTGCTCCAATCTCCACCATGGTTTCTCCGAAGATG 530645 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || || || ||||||||||| | || || | ||||||||||| || |||| |||| Sbjct 530644 GCTCCCGGCCGCGGCTTTTCCACGAGGAGGCCTGGGTACAGCTCCATGGCATCGATGTCT 530585 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || ||||| | ||||| || || || || || |||||||| Sbjct 530584 CCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTCTCTCCTGT 530541 >seq1833 Length=6533496 Score = 136 bits (150), Expect = 6e-27 Identities = 182/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| ||||| |||||| Sbjct 1923567 TCACCGATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGT 1923626 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 1923627 TCCCGTTTCAGGATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 1923686 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| || || |||| || || || ||||| || | | | ||| Sbjct 1923687 CAGAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCCACTGCCAGCTGCTTCTCCTTGGGT 1923746 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | || || |||| |||||| ||| | | || ||||| |||||| |||| ||| Sbjct 1923747 ACAGCAGGCGGGTAGACCATGTGAACCGGAGCATCAGTGACCATGGGGGGGTACACTTCT 1923806 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 1923807 CCATCCACCACCT 1923819 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360 |||| ||| ||| |||||| || || || || || | ||| |||| || ||| Sbjct 1920550 ACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCAAGTGATGCTGTCTTCACTATCT 1920609 Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 | || || |||| || || || ||||| ||||||||| | |||||||||||| || Sbjct 1920610 CAAATCCGGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGT 1920669 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | ||| || || |||||||| || ||||| || | ||| | ||||| || || || | Sbjct 1920670 TTCCCAAAAGCCCCTTGAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCTCCAAAAA 1920729 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | | ||||| |||| || || | || || || || | ||||| ||| || | || Sbjct 1920730 TACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCACATAAAACTCCAGAGCATCAATGT 1920789 Query 8541 CTCCGTAAAG 8550 |||| || || Sbjct 1920790 CTCCATACAG 1920799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716705896570880