Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2613 109 4e-19 seq2503 98.7 7e-16 >seq2613 Length=5972682 Score = 109 bits (120), Expect = 4e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||| || || | |||||||||| |||||||||| || ||||||||||| Sbjct 5846251 CTTGAGCTCCCGGCTAAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGG 5846192 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || |||||||||| |||| | |||||||||| ||| Sbjct 5846191 AATGGAGAACCAGGTTCTTTTACCCATTATCAGTGCATTCTGTTTACCTG 5846142 >seq2503 Length=4670858 Score = 98.7 bits (108), Expect = 7e-16 Identities = 134/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || ||||||||||| || ||||| || ||||| | ||| || | Sbjct 1124922 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 1124981 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | ||||| | ||||| | || | |||||||| |||||||||| Sbjct 1124982 CCTCTCTGGTGTTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 1125041 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA-AC 102211 | | ||| || ||| || ||||||||| | ||||| || || | ||| |||| || Sbjct 1125042 TCTTCACACCCTTTGCGGACAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAGAC 1125099 Query 102212 AGT 102214 ||| Sbjct 1125100 AGT 1125102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361184423505917