Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Charadrius_20vociferus_20[refseq_20GCF_5F000708025.1_202014-08-05] 15,167 sequences; 1,219,859,583 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1465 138 1e-27 seq2109 131 2e-25 >seq1465 Length=279535 Score = 138 bits (152), Expect = 1e-27 Identities = 186/257 (72%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | |||||||||||| Sbjct 156567 GGGCACGCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 156508 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 156507 GACGGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 156448 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCC--CTTGCACCGTTGACC 83296 ||||| || ||| ||||||| |||||| || || || ||||| |||| || Sbjct 156447 GAAGGGCAGCGCTTCTTTCAGGAAGGTGAAGAGGGGGTGCGCGTTCTTGC--CGTTCACG 156390 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| | || || || |||| | | ||||| |||||||| ||||||| | Sbjct 156389 TCGCACTTCTCGAACATGATGAAATTGGGCTTGTACCCGTTGCCAGGACGAACGTGCTCC 156330 Query 83357 AGGGAAGGCAAGATCTC 83373 || | ||| |||||| Sbjct 156329 AGCGTGAGCATGATCTC 156313 >seq2109 Length=710 Score = 131 bits (144), Expect = 2e-25 Identities = 224/312 (72%), Gaps = 16/312 (5%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CAG-CGGTGGCTGTACCTG 83113 ||| ||| || |||||||||||||| || || ||| || ||| |||||| | Sbjct 691 GAGGAGGCGCTGGATGTCGGGCTCCA--GCTGGGCGGTGGGCATACGGGCGCTGTAACGC 634 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || |||| |||||||| |||||||||||||||||||| | ||| | Sbjct 633 CGGAAAGGTTCTCCTTCAGGACCCACCAGGAACTTCTCGAAGTTCCAGGAGATATCGGAG 574 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTC 83232 || | || || ||||| |||| |||| ||| ||| || ||| || ||||| Sbjct 573 CGCCGTACCGGGCTCCAGGTGATGAAACGGGGCTCGGTCATCAGGTGTG-TCGCCTCGTC 515 Query 83233 GCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCA 83287 | ||||| |||||| |||| || ||| ||||||||| || || || ||| || Sbjct 514 GGCCGGCGCGGGCAGGTGAGCCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCCT-GC- 460 Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG 83347 ||||| |||| |||||||| |||||| | ||||| |||||||||||| ||| || || Sbjct 459 CCGTTCACCTGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCGCCCCCCGGCCGC 400 Query 83348 ACGTGCTTCAGG 83359 |||||||||||| Sbjct 399 ACGTGCTTCAGG 388 Score = 114 bits (126), Expect = 2e-20 Identities = 119/154 (77%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| ||||| ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 256 TTACCTGGTAGCCGAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 199 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| ||||| ||||| |||||| | |||||||| |||| Sbjct 198 GCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGAGACG 140 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||||||||| | || |||||||| || Sbjct 139 CCACGTTCTCGATGAGGACCACGCGGCCCCGGAA 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608681379736680